Array 1 588-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384351.1 Rathayibacter toxicus DSM 7488 H594DRAFT_scaffold00018.18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 587 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 526 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 465 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 404 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 343 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 282 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 221 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 160 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 99 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 38 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.0 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAA # Right flank : ACCGCTTCGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4436-3324 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384351.1 Rathayibacter toxicus DSM 7488 H594DRAFT_scaffold00018.18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4435 29 100.0 32 ............................. TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 4374 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 4313 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 4252 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 4190 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 4129 29 100.0 33 ............................. CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 4067 29 100.0 32 ............................. AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 4006 29 100.0 32 ............................. ACGCAGCACCCTATCCTTCAAAATCACCATTT 3945 29 96.6 32 ............................C AATACACCCGAATACAAAACAGTTAAACCGGC 3884 29 100.0 32 ............................. AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 3823 29 100.0 32 ............................. AAATATCGAGACCCGCGAACTTATCCTTCGAC 3762 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 3701 29 100.0 32 ............................. TCACGCGGAGAATAATCTGACTAACACTTTCG 3640 29 100.0 32 ............................. AGCGTCACCAGAATCGCGACCATCCTGCGGGC 3579 29 96.6 14 ............................A CCAGNNNNNNNNNN Deletion [3537] 3536 29 100.0 32 ............................. AGCGTCACCAGAATCGCGACCATCCTGCGGGC 3475 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 3413 29 100.0 32 ............................. ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 3352 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.4 31 GTATTCCCCGCGCAAGCGGGGATGGTCCT # Left flank : | # Right flank : TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 169090-167226 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384350.1 Rathayibacter toxicus DSM 7488 H594DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 169089 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 169028 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 168966 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 168905 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 168844 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 168783 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 168722 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 168660 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 168599 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 168537 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 168476 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 168414 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 168353 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 168292 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 168231 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 168170 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 168109 29 100.0 32 ............................. CCAATACTATTAATGCGCAATCCAAGAAAACG 168048 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 167987 29 100.0 32 ............................. CCAATACTATTAATGCGCAATCCAAGAAAACG 167926 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 167865 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 167804 29 96.6 32 ............................G AAACCATCGACCTAATCCTAGAGGCAGGCGAG 167743 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 167682 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 167621 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 167559 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 167498 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 167437 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 167376 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 167315 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 167254 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= ================================= ================== 31 29 96.9 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : AATTTTAGGCGTCACATATGTCTGTATTCCCCGCGCAAGCGGGGATGGTCCCGGCTTGATGTCCTTTTCTTCCTGAAGGATTTTCTATTCCCCGCGCAAGCGGGGATGGTCCCCCTGCGGCCCGGCCGGTTCCCATCCTTTATAGGTATTCCCCGCGCAAGCGGGGATGGTCCTCCTTTCGAACCTCGCTCGTGAGGCGAAGAATAGTATTCCCCGCGCAAGCGGGGATGGTCCGTTAAAGCTTTTTGCACAATGTCATCCCGGCGAGTATTCCCCGCGCAAGCGGGGATGGTCCTAGGGAGCCTAGCGTATTGTGTAGTACCATAAAGTATTCCCCGCGCAAGCGGGGATGGTCCAAAGGGCGACCGGATTATGGTTTTAGATAGCAACGTATTCCCCGCGCAAGCGGGGATGGTCCTCCTGCCGCGGNNNNNNNNNNGTATTCCCCGCGCAAGCGGGGATGGTCCTCCTGCCGCGGGGGTTGCGCCGACTACAGTGCA # Right flank : CAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTCA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 172427-171360 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384350.1 Rathayibacter toxicus DSM 7488 H594DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 172426 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 172365 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 172304 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 172243 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 172182 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 172121 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 172060 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 171999 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 171938 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 171877 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 171816 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 171755 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 171693 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 171632 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 171571 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 171510 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 171449 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 171388 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.9 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTT # Right flank : TCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 175708-175557 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384350.1 Rathayibacter toxicus DSM 7488 H594DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 175707 29 100.0 32 ............................. TCTGCGCACTGGGCCATTACTGGGCAGCGTCT 175646 29 100.0 32 ............................. TAACCAACCGACCACCATACATAGATTGGACC 175585 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : ATCTGGTTGGGTCGCCTGGTTTTGGGCGCGTTGTATTCCCCGCGCAAGCGGGGATGGTCCTGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //