Array 1 282-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCYN01000022.1 Ligilactobacillus ruminis strain bz_0080 Scaffold_0022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 281 28 100.0 34 ............................ TAGCGCAGAAAATTGCGAGTTTGTGAGGTGGATA 219 28 100.0 33 ............................ CGGGAACGCTATCAAGAATTACGTACTCTTCGG 158 28 100.0 33 ............................ TTGAGGTTAAATATTTTGGTGGTCAAAAAACCA 97 28 100.0 33 ............................ TAATCGTATTGAATCCCTCGTTGATTCTAAAGT 36 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 5 28 100.0 34 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : GTTACCAATGATGTCATTATATCTTTGGCAGCAGTAAAGGGAGCCACTGGTGATCGGTTCTACAAACTTATAAGGACAAATAACTTGATATCACCCAAGATAGTTGCGTTAACAGGTATTACGAATGAAAAGCTTGAGAGTGAGGGCGAGGACATATATGCTGTTTTGAATGAATTTAAAAAATTCATAGAAGATGATATACTGATAGGGTTTAACATAATGAACTTTGATTTAAGATTTATTAATGCCGCAATGATAGCAGCCGGAATAGAAGAAAAAATGAATAATACAATTATTGATTTGTTGCCAAGGATAAAGAAGATAGATTCATTTTTGGATAATTATCGTTTTGAGACTGTGTTAAGGGCCTATGGTGTAACTAATAATCTTCCGCATAATGCTTTGTCAGACTCCATAGCTTGTAGGGAGTTAGCTGTCAAACTAATGAAAAATGGGAAGTTGTCATTTTAGAAATGCCGATATATAAGGGATCTTTTAGT # Right flank : CTCAATGTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 618-1195 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCYN01000045.1 Ligilactobacillus ruminis strain bz_0080 Scaffold_0045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 618 28 100.0 33 ............................ TGACGACGTTACTATCAGCTGGCCACCGTCCGG 679 28 100.0 33 ............................ CTCCCTTTGGGGTCGTTGGGCTATGACCTCAAA 740 28 100.0 33 ............................ TTAAAGTGCGGGCTCTTTTTGCAACCGAAAGCG 801 28 100.0 33 ............................ TCGATTATACAGGATTCATGACAACCACGGCAA 862 28 100.0 34 ............................ TATTTTCGATGTCGTCATCCGCTTTTTGTCTCAG 924 28 100.0 33 ............................ CACAAGAAGACGTGGAAGAGAGCATATCAGACC 985 28 100.0 33 ............................ CAAGGTCTCCGTCAGCGTTTGTCTTGATGTCTA 1046 28 100.0 33 ............................ TTGGTGGTGGGATAATGAACATGATTTTCTCTA 1107 28 100.0 33 ............................ TGAAATACAAAATCACGTGCAGAACATATAGGG 1168 28 89.3 0 ........................T.AT | ========== ====== ====== ====== ============================ ================================== ================== 10 28 98.9 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TGCGGGGGTGATCCTACCGTGTTTATGATTCTTTAGGTAAACCAAAGGTCGATTATGATTTAACTAATCATGGCGCACCAAAGTATCACCCAATAGTACCGCATGCGCATGACTGGCTTGCCATTAAGAGTGATGGTGTTGTAAAATATGAGCGGAAAAAAGAGTGGCGTGAATTAAACCAGAACGAGAAAAATAATATAGAAAGGTGGTTAAAATCCCATGAACGCAAATAACCTTAATACTCTAAAAGCTTTAAAAGAAGCAATGAGTTATAATCTTGAAATTTATTTCAAAATAAATGGTAAGCAATACATGATTCTACCTGATCCAAAAACTGGGATATTAGAGGATGGATGGCTTTTAGTTTGTGAAAATTCTCTTTTGAAAAAGGGATCCACCTTTGATATTTTTAACTATAAAATTAATGGACAGTTACTTAAGGATATTTGGCCAGAGGTTAAAGATGTTGAAATGTAACAAAAAAAGAGTGTTTTATATGA # Right flank : TGAAGTTATCATAGATAAATATATGAAAAAATTAATGAGACATACTGTTTGAATATTCCTTTTCTGACAATTTTAAACCGCCATAAAACGACAATTTAAATCCACCTTTGACAATAAAATTGATAAAATACTTAATTGCCGCAAATTTGCGGTAATTAGGCTTTTTTTAAAGCGTATACTCAAGTTATAGCTGAAATTTTCGTATTGTATTGGAGGAATTCAAAATGAAGGTTAAAACATTTTTATCTATAGCATGTTTGAGTCTTATGCTTGTCGGTTGTGGTAACGATACTGTTGACAATTCTGGCAAAAGTGTAGAATCAACCAATAATAAAGTTTCGAAAGTCAAACACAAGAAACCTAAAAAAGATCCGCGTGAGGTCGTAAATGGAGAACTTCTTAAAGTCGGACAATGGTGTAATGATGATGAGCAAGGGAAAATGGAGTTGTACAAAATTTGTGTGCCTGGGACGGTAATTGATGATGGATCAATCAAGTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //