Array 1 76978-79653 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAOM01000014.1 Trichococcus patagoniensis strain DSM 18806 Ga0192380_114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 76978 36 100.0 30 .................................... AATTTGAGTTGCTAGAAAGTCCAGCACGCT 77044 36 100.0 30 .................................... GCGGCCTGTGCGTTTTTTGTAGCTTGTCTG 77110 36 100.0 30 .................................... GAAGCTGACCGCGTATGTTACGCAGGGCAA 77176 36 100.0 30 .................................... CTATCAGGCTATTAGAAGAACATTCCTATA 77242 36 100.0 30 .................................... CATTCACTTGAGTTCTGTATCTGCCCAGAA 77308 36 100.0 30 .................................... CCGGAAGATCAAAACGGTCAATTTCCAACA 77374 36 100.0 30 .................................... CACACCCACAACCGGGATGTCCGACCTGCC 77440 36 100.0 30 .................................... TTGCACTTACGGTACCATCCACAGCTAGTC 77506 36 100.0 30 .................................... ATAATGATATACTCACCCATTACAGGGTCT 77572 36 100.0 30 .................................... GGAATCAAACGGCGCGAAATTCGGTATGGG 77638 36 100.0 30 .................................... GGTCAAGCCTGGTAAAGCCGACATCAGTTA 77704 36 100.0 30 .................................... CACAGGATTGATTTCCTGAAACTGGTACTA 77770 36 100.0 30 .................................... TAATAATCCAAGGTTTGAACCTGTTAACCA 77836 36 100.0 30 .................................... TCATGCGGTGTCCACAATGCCGGAGTAGTG 77902 36 100.0 30 .................................... CTCAAAAGAGGGAGCGGCGCCCGATTGGGA 77968 36 100.0 30 .................................... CACTGCTAGATGGTACATGGGATGGCTTGG 78034 36 100.0 30 .................................... CAACTATCTTTACAGAAATTATATTTTGAA 78100 36 100.0 30 .................................... TCGCTTGTGTTGCTTCAATTTCCTGATACT 78166 36 100.0 30 .................................... CCAACGGAACAGGCGTGATTGATGCGGATT 78232 36 100.0 30 .................................... TCCGAGTGTTCCCTCATCCAACTAAAAATT 78298 36 100.0 30 .................................... GTCCTGAAGTGCCAATTGCAAGGTTTTCGA 78364 36 100.0 30 .................................... TAGTATTTACTTTACTGACTTTTTCATTAT 78430 36 100.0 30 .................................... AGTTGCTCAAAGTTATATCGGCGTGCATTA 78496 36 100.0 30 .................................... GATCAATGGCTTCACTGCTGAAGTCGAACG 78562 36 100.0 30 .................................... TGTTGGATAAATTGCTCGATGACGAGAACA 78628 36 100.0 30 .................................... TAAGCCGATCGACATTCCGAATTGTGAGCA 78694 36 100.0 30 .................................... GAATGACCAGTGTGTATCAAAGGCTAGATA 78760 36 100.0 30 .................................... CGCATTGTCAACGGGATTAACAAAAAAATC 78826 36 100.0 30 .................................... TCATGGCGACCACGGAAGAATATATCCGCG 78892 36 100.0 30 .................................... AAAAGATTTATAAACCAATACTTGAACTTC 78958 36 100.0 30 .................................... CAGTATCGTTCGATAAATTCGATCGCGTGC 79024 36 100.0 30 .................................... CCACATGGTCAATGATGACGCTGACTTTAT 79090 36 100.0 30 .................................... AATAACATCCGCTTGCTGAAAAAGCGGGGC 79156 36 100.0 30 .................................... TTACCATCAAGCACAGTGTAATAGGTGTTG 79222 36 100.0 30 .................................... TGAGGACAGAATCATCACACTGGAAGGCAA 79288 36 100.0 30 .................................... CCTGTTGTTTAACGATAAAACGCGAACGTA 79354 36 100.0 30 .................................... CTGATACGGCGCGCATCCTCCAGGAGTTGG 79420 36 100.0 30 .................................... GTGCAGAATCACTTAGAGGAACTTGAAGCG 79486 36 100.0 30 .................................... TCAGCGAATGCAGCAGTTACGCCCGCTTCA 79552 36 100.0 30 .................................... ATATCAGTCGCCCGAATGCGAAAGATTGGG 79618 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.9 30 ATTTTAGTTTAGCCGATTTTGTAAGGAAACTATAGC # Left flank : AATGAATTACATTCCCTTACCAATGCAATCCGAAAAACGGTAGCTTCCTACACCAATTGTTGCAGAAATAACACAACGACCAATTTGAAATTACCCGAATTGGTTCCGTTGCGACCGCACGAGTATGAGTAGCCGCTTTATGAGAATGGTGGTTATGTTCGACTTACCCGTGGAAACGAGAGAACAAAGAAAAATTGCAACAAAATTTAGGAAGTACCTATTGGATGAGGGATATGTAATGATGCAGTTTTCGGTTTATTATCGGATTTGTAACGGAAAAGACATGGTGAATAAATATCTGTTGCGCTTGGAAGATAAAGTTCCAGAAAAGGGTTCTGTCAGGTTGATTACCTTGACAGAAAAGCAATTTAGTGAAATGAAAGTTTTGGTAGGTGGCGTTTCACCCATAGAAGAGAAGCTGGATTCCAGCAATCTGTCCGTATTTTAGACACGCCAAACGGCCCTTTATAGTTGATATGAAGGGCTTTTTCGCGCGAGAT # Right flank : CTCTCTGTCAAATGGTGTTGATGAGACATTTTATCTGTTGAAATAAGGGAGCCACATTCACAAACTCCAGAAGAGAATTTTTCTCTTTTGGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGTTTAGCCGATTTTGTAAGGAAACTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 181-3117 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAOM01000019.1 Trichococcus patagoniensis strain DSM 18806 Ga0192380_119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 181 36 100.0 30 .................................... TATTAATAATCACTCAAGATCTGTAACTGA 247 36 100.0 30 .................................... AAACCATTTAGTATAATAATCCAAAAAAAG 313 36 100.0 30 .................................... GCACATTGAATGGCATGGCTGATATTTTTG 379 36 100.0 30 .................................... TCTCAATGACTTGGCGCGTCGAATCGGAAG 445 36 100.0 30 .................................... GGGTACACCGGGTGAGCAACCCGAGAAAAT 511 36 100.0 30 .................................... TCGTTAACCGCGCTGCATTGACTAAGCTTG 577 36 100.0 30 .................................... TTCGCTTTTGACGCAGAATCAGATATTGTC 643 36 100.0 30 .................................... GACCTTGGAACGCGCCTACAGCACGCAGAA 709 36 100.0 30 .................................... GTTTGGGGATGTGGACGCGTGGCACTACGG 775 36 100.0 30 .................................... ACTTAAGGTATAAAAGGTTCTAACACTTTA 841 36 100.0 30 .................................... TACAACTCAATGCTTCTAATTACACAACTT 907 36 100.0 30 .................................... GATTTGAGTTGCTAGGAAATCCAGCACGCT 973 36 100.0 30 .................................... AATGTTGCTGCTGGTGAGCGAGTTGAAATA 1039 36 100.0 29 .................................... ACTGAGACTGCGTACCGTATATTTGATAT 1104 36 100.0 30 .................................... TTTGAATATTAACAAGGCTGTCAGCCATGC 1170 36 100.0 30 .................................... CCATGATGCAATAACATGATACTCCTGAAA 1236 36 100.0 29 .................................... CTGGGAGCTGGTCTGCGTTCAGTGAATTG 1301 36 100.0 30 .................................... CATGGAAAGACAAGTAGGCTATGATGCCAA 1367 36 100.0 30 .................................... ATATCAGAACGTCTCGAAGTCTGAGTATGC 1433 36 100.0 30 .................................... TAGCACTCACGCTTCCTTTTCTTTGTTTGT 1499 36 100.0 30 .................................... TGATATCTACAGTATAATATACATTGTCAT 1565 36 100.0 30 .................................... ATCTGAAAATGGTGAAGGTTCAGAATTTGC 1631 36 100.0 30 .................................... AGATATGCCTGTTACTATTAAAGCTCAAAG 1697 36 100.0 30 .................................... GGGAGTTCCTTGATAAAGAAGAGGCAAGCA 1763 36 100.0 30 .................................... GCGGATATCTAATAGGAATTCATCCAGAGA 1829 36 100.0 30 .................................... GCTTAAGCATGAGAACGTTATAAGGCCGTT 1895 36 100.0 30 .................................... AGAAACGGGCGGCGAGATACTACAGGGGTT 1961 36 100.0 30 .................................... TGGCAGACCCGGGTACCTGGGGAGAACGGG 2027 36 100.0 30 .................................... ATGATAAAACATTATACAAAATTCCGTATT 2093 36 100.0 30 .................................... GCGACTACTCGCCTTAGCACTTGCGTTTGT 2159 36 100.0 30 .................................... CGTCTGCGGTACCAAAGCAGTTGTCGCTGT 2225 36 100.0 30 .................................... TGCCGATAGCTTCTATCCATTGGGTAGTGA 2291 36 100.0 30 .................................... CCATCTTTAAAACGTACGGCATATTGATAC 2357 36 100.0 29 .................................... TACGCCTCCTCACTTGTAGCTGACCAGTC 2422 36 100.0 30 .................................... GGGAGAACGCGGTAGTAGATCACGGCGGGC 2488 36 100.0 30 .................................... GTAGGCGTTTATCCGTAATCGCCAACACAT 2554 36 100.0 30 .................................... ACAAACGCAATTCTTCGTTAGCCACGTCTG 2620 36 100.0 30 .................................... CGAAGCAACCGGCTCAAGTGTTACTGAACC 2686 36 100.0 30 .................................... AGCGTCGGCACCAACTCGGATATCGGTTGT 2752 36 100.0 30 .................................... CCCTACAGGTGTGAAGGTACCTTTGGGGAA 2818 36 100.0 30 .................................... GTCAATGAAGCGGAACCCGTTTATGATGAC 2884 36 100.0 30 .................................... ACGCCTTTATCCTTCAGCTGCGCAATCTGC 2950 36 100.0 30 .................................... TATGGGTGCGCTTAGAAACCATATCATTTG 3016 36 97.2 30 .............T...................... GGTTCATCCGCATAGTACATGTCCAGCCTC 3082 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 45 36 99.9 30 ATTTTAGTTTAGCCGATTTTGTAAGGAAACTATAGC # Left flank : GACAAATGAAATCACTCCTTAAAATATCTGGCTTAGTCACCTTTATTTTAACAGAGTATTTCATTTGTCCTTTTTTTTGCACTTTTCACAAAAAAGGTGTTGATGAAATTTACTTCATCAACACCATTTATTATAGAACCAAACTATAGCGATATATGGATGACATGGTTATTTTCGGGCA # Right flank : CCTGCATTCTGCATTGCGGCCGATACAGCATCAAGTCTAGAAGTGGGGATATTAAAGAGACCATCCGGACCTCCATCCGCAATACCAAAAACGATAAAGCAGCTCGAAAAAACTAGCCCAATCAAAAAGCCGCCGTGCACATGATGATATGCAAGGCGGCTTTTACTTTATCATACTTCTTGAATGATCCCATGGTTGAAAATATCATAATCGATTGCATCTTCAGTTTTAGCGACAATCAGCGCTGTTGTTGTATCAGCAGTCACATTCAGGATTGTTCTCAACATTCCCACGAACCATTCTACCCCGGCAAAAAGGGCGATACTTTCAATCGGCAAGTTCATTTGCGGAACTACGATAGCCAAAGATACCAAGCCAGCTCCTGGAACAACGGCATTTGCCAAAGAAGCAAGCGCAGCCAAGAATGCAATATAGATGTAGTTCGTCATTGAGTATTCCACACCATAAATCTGAGAGATTGTGATGACGGTGATCGCCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGTTTAGCCGATTTTGTAAGGAAACTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //