Array 1 729537-731486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVFP010000002.1 Citrobacter koseri strain CB00140 CB00140_c0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 729537 28 100.0 33 ............................ CTGCGACCTGGCGTATTGTTCGGCATCTTTTTG 729598 28 100.0 32 ............................ AGCGAAGTCGAAGCGTACCCAAAGGTTAGGCT 729658 28 100.0 32 ............................ CTGGTCTGCTGACATTATCTGCAATGAAATGT 729718 28 100.0 32 ............................ ACTCGCCATCCGATTTGACGTAACCGGTAGTC 729778 28 100.0 32 ............................ AGTATCAAGGGCAGCACGCCGCCCTTTGTAGT 729838 28 100.0 32 ............................ AGCCGGGAGAACGAGTCGCTTACCCTTGTTGG 729898 28 100.0 32 ............................ AGATGTCGTCAGAACTGTACGACAGGCACGTT 729958 28 100.0 32 ............................ CATCCGATGATTTCATTCGGATATCGTCATTG 730018 28 100.0 32 ............................ TCGCAAATGCACAAGATGAGAAGTCACTACAG 730078 28 100.0 32 ............................ TGCGCGGGATGCAGGGCAACGTTGTCATTGAT 730138 28 100.0 32 ............................ AGAAACATGCTTAACGCGCAGCGATACCAGCG 730198 28 100.0 32 ............................ TTTATGCACTATCCCGGCGGGCTGGTATTTTC 730258 28 100.0 32 ............................ GTAAAGCGGGTCGTGCGCAGGCAGCTGCGGCG 730318 28 100.0 32 ............................ CGCCTCGGGCTGCATCGCTCCGGCCTGTTGTA 730378 28 100.0 32 ............................ ATAAGTCTGGATTCAGCATTTAAGGGGGATTT 730438 28 100.0 33 ............................ ATACCCAATTCCCATGAACTCGGTGACATATTT 730499 28 100.0 32 ............................ ATACACATGCCGCGCTGGGCCAGTCGCATTCT 730559 28 100.0 32 ............................ CGGAAGTGTTGATGATCTCCGATACTATGAAA 730619 28 100.0 32 ............................ TGCTCACCGACCGAGGGAGCCCACCACGTCCG 730679 28 100.0 32 ............................ AGTGAGAGACGTTAACCGCATCATAAATGAAT 730739 28 100.0 32 ............................ ATTCATACAGGTATGCGACACGGTGAGCTGTG 730799 28 100.0 32 ............................ AGGATGCCCGGTGTTGTTCACCATCAGATGTG 730859 28 100.0 32 ............................ AATAGCAGAACCCCATCCCATAGTTTTTACTC 730919 28 100.0 32 ............................ GCAACTTTCGTAAACATGCTCGGCAGCACAAA 730979 28 100.0 32 ............................ GAACACGTCATCGTTAGGATTATCACCTACAC 731039 28 96.4 32 .............T.............. ATCACCTGAACCACACACGCAAATATATGAAC 731099 28 100.0 32 ............................ AGGTGGCGAGGAAAATTGAAACGGCAGCAAAT 731159 28 100.0 32 ............................ TCATCAAAGCGGCGACAAGTGAAACATGGTGG 731219 28 100.0 32 ............................ AGTCGTGGGAGGCGGCAATGCGACGCGCCGGT 731279 28 100.0 32 ............................ AGTTCACCGTGGCGCACTCCGGTGTACACAGC 731339 28 100.0 32 ............................ GAAATTAAAATCGTAGTCAAAACGCTGTGGAA 731399 28 100.0 32 ............................ GGTGCAACCAGTGTCTCCGACGTAATCAATGT 731459 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCAGAAAGGCGTCTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCAGAGAAAGGCTATGACCGCGCGATGGGCGCGCGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGCTGGCAAACGAGCTGCTGTTCGGTTCGCTGGTTGGCGGCGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCCGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTTGCCGTCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACTGCTTCA # Right flank : ACCACAAATGTAATTATTTATTTTGAACGCTCTTTTGTTGATTTTTATCATTTCATCTGCCAGACCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCTAAACGCGCCAATATATATTATCTTGAAAAGTGCCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCGGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCAATGCGGGAGTTCGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGCTGTCACCGCAAAGTGAATATCGGCCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 743378-743706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVFP010000002.1 Citrobacter koseri strain CB00140 CB00140_c0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 743378 28 100.0 32 ............................ TTACCGGGATTCAGTCGGCATGGATTAAATCA 743438 28 100.0 33 ............................ CTTCTCCGGCAGCACGTCTCCCGCCTGTACATT 743499 28 100.0 32 ............................ GTCAATACCTCATCGACATTCAGGAGGTATAC 743559 28 100.0 32 ............................ CACAGGGAGCGCTGGCAGGAACGGGCCTGAAT 743619 28 100.0 32 ............................ TTAAATGCGCAGAAGTCTGGAGGTGTTCAAGC 743679 28 85.7 0 ....................T.C..T.T | ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCGCAGGGCGCGCGCGCTGAAGTTCACTTTACACCGCGTTTGATCACTACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGGGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGCTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTATTTCCGTCCCGCCGTGGATTGTTGCCGTCCGTACGCGCGCTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAAGATTAAAACAGAGCGCAATATACCCTTTTTATTTTATGTTACTAACTTATTGATTTTATTTTATATATACAACTTTGGTGAAAAAGGGTCTGACAGGAAGATGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TTGAATGTAGAAGGAAGGGACGCTGCGGGGAATAAAAATAACGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGACAACAAAAAGGCCGGATAAACCGACCTTTTTTATCTTTACGCCACCCGGGCGTGAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCACT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //