Array 1 42956-41707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRKI01000016.1 Streptomyces natalensis ATCC 27448 Scaffold_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42955 29 93.1 32 ........................G...A TACGAGTTCAGGGTCAGGCAGCCCGCGCGGTC 42894 29 96.6 32 ........................G.... GACAGCACGGGCGCCACGGTCTACGTGACCGT 42833 29 96.6 32 ........................G.... AACGCCGCCGAGACCGCGTGGAGGGCAGACGG 42772 29 96.6 32 ........................G.... CGGCGCATCCCGGCGATGGGCGCCGCGCTCAT 42711 29 100.0 32 ............................. GACACGTTCGCCGGGCCCTCCGGCTCGCCGCT 42650 29 96.6 32 .............G............... TTGCCGGCCAGCCCCTTCTTCAACTGTGCGAG 42589 29 100.0 32 ............................. GACACGTTCGCCGGGCCCTCCGGCTCGCCGCT 42528 29 96.6 32 .............G............... GACACGTTCGCCGGGCCCTCCGGCTCGCCGCT 42467 29 96.6 32 .............G............... GACACGTTCGCCGGGCCCTCCGGCTCGCCGCT 42406 29 96.6 32 .............G............... GACACGTTCGCCGGGCCCTCCGGCTCGCCGCT 42345 29 89.7 32 .............G....A...G...... TTGCCGGCCAGCCCCTTCTTCACCTGTGCGAG 42284 29 100.0 32 ............................. CCCGACGGGTGCATGCCGCAGCTCCCCGTCGA 42223 29 96.6 32 .....................G....... CTCACCACCAACGGCATCTGGGGCTTCGAGAG 42162 29 100.0 32 ............................. CCCAACGCCCAGACCATGGGGGACGGCATTGT 42101 29 100.0 32 ............................. TGCCGGCCACCGAGACTGATGGCGTATCCGTG 42040 29 96.6 32 .C........................... GTGTTGGCGTTGGCCAGCGCCATGATGGCCTT 41979 29 96.6 32 ............T................ GTCACGGTGAACGACTCCGGCCGCTCGACTGG 41918 29 89.7 32 ............T.T.............A TAGACCTCTCGCAGGGCGGCGGCGGCCACTTC 41857 29 75.9 32 .....G.....TTCT......G..C.... TACCAGCCGTCATCTAGTTGGTAGGCGTGGCC 41796 29 79.3 31 ..TT........T...T.......CC... GCGGGGCAGGCAAATCCACCATGCTCGCGCA A [41768] 41735 29 79.3 0 .C.G........TC..........C.T.. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 94.0 32 GTCCGCTCCGCGCACGCGGAGATGTTCCG # Left flank : AGTAAAGAATGGGCAAAGTGCCCCCAATGGTGCAGGTCGCGAAG # Right flank : ATGATGCCCCATTCAGACTTCGGCGCATGACGAGTACGTGTGCAGACGACCGGGGCCTCTCGTTACGAGAGGCCCCGGTCGCTTCGGAGGACAAGACCGCTAGCGCGCTACGCCGTGATTGTTTCCCGCCCAGCCGCCCCGCAGGTGCACGAACATGTGCACCCCTCAGCCATGCCAATGGCGGTTACGGGCTGCACGGCACGCCGCTCGATCGCCGTACGGATCGCTCGGGGAGCACGCGGCACGAGCTTGACCACCGCTTCCGCCGCCGCACGGGCCAGGTCGTCGAGGACGGACTGGTAAATGTCGCGGGTGATGCGTGTGTCGCTGTGTCCCAGTGTCTCGGATATGACCTTGATGTCGACGTCGGCCGCCAGCATGAGGGTCGCGGCGCCGTGGCGCAGGTCGTGGAGGCGGATCGGCGGCAGGCCGGCCTCGGCGACGAGGCGTTCGAAGAGGTCGGAGATCTTGCCTGGGTGGAGAAGAGAGCCGTCCTCCTC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCACGCGGAGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCACGCGGAGATGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77509-77301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRKI01000032.1 Streptomyces natalensis ATCC 27448 Scaffold_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 77508 25 100.0 36 ......................... TTCGGCAGCACGCGAGCCCCTCCACCTCCCCACCCT 77447 25 100.0 36 ......................... TTCGTGGGTGTAGGCCCCAAGTTCCAGGCCGAGTTG 77386 25 96.0 36 ........T................ TTCGGGCCAGGACGGCGCTCCCAAACCGGATCCTGC 77325 25 96.0 0 .....................A... | ========== ====== ====== ====== ========================= ==================================== ================== 4 25 98.0 36 GTCTTCCCCGTCCACGCGGGGCTGG # Left flank : ACGCATCCGGCACGTTCTACCGATATGCCGTCCTCGACCTGGACAGCCTCCTCAACAACCTCGACAGCGACACCGAAACCGCCCGCATCCTCGTCACCGCGTTCACCGACGGATTCATCCGCACCCTCCCCCAAGCCAAGAAGAACACCACAGCACCAGCCACCGCACCTGACCTGGTCCACCTCACCGTGCGGACCGACCAACCCCTCAACTACAGCCCCGCATTCGAGCGCCCCATCACCGACCACAACCGGTCCGGGTGGGCCGAACCGTCCCGCCAGGCCCTCGCCCACTACGCCCAGCGCCTGACCACCCTCATCGGCGACCCCGACACCGGAGCATCGCCCTGGTCCGGCTACGCAACCATCGCCGCCGACGACTACCCCGGCCTCGGCGCCCGGGCCACCTCCTACCCGGCACTCACCAAGACGGCCACGGAAGAACTGTTCGACGCGCATAACAAGACGGCAAAGCGCCCCTAACATTGCAGGTCAGGGAGA # Right flank : GCTTCCCGCAGGCGCGGGACCGCTTCTAAACCTGGAGATTCAATGGATTACGGACTTCTTCTGCACCTTGCCGCGCCGATGATGTCGTTCGGTACCCATTCGGCATTCACGATCCGCGACACCCACAGCAGGCCCACCCGCTCGGCCCTGATCGGCCTGTGTGCCGCTGCCCTCGGGCTCCCCCGGGACGCCGACCTCACCGACCTGCGCCAGCTGCGGTTCACGATCCGTGCGGACCGCCCCGGCCAGCAGCAATCCGATTTCCACACTGCTGGTGGCGGGTACGCCGCCGCTCGGACAATCCCCAGCGCCGACGGAGGCCGCAAAAAGCCCTTCGTCGCGACCGTCATCACCCATCGGCACTACCTGGCCGACGCGGCATTCACCGTCGCCGTCACCGGACCAGCCGACATGATCGACGAGGTTGCTGCCGCCCTGGACCAGCCCCGCTACCCCCTCTACGCGGGCCGTCGAGCGTTCCCCCTCGCCGGCCCCATCCT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGTCCACGCGGGGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 81073-81528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRKI01000032.1 Streptomyces natalensis ATCC 27448 Scaffold_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================================================================================================================================= ================== 81073 27 100.0 34 ........................... GTGGGCTGGTACCAGACCCGGGTCTTGTAGCCGA 81134 27 100.0 34 ........................... CTGCGAGGGCTTTCGCCGCTCCACGGCACGAAGT 81195 27 96.3 34 ............T.............. ACCTCGGTGACCAGCGCCAGTTCCTGGGCCCGGT 81256 27 100.0 34 ........................... GCTCATCGGCCACCCGGACGACGTCCGGCGCCGT 81317 27 88.9 157 ......C...GA............... GCCAACGCGCTGGTCCTGGGCTTGCAGGACGAGTTGTTCCCGCAGTCGCAGGATGGTTCGGTTGGTTCCGGGGCCGTAGAATTCCGAATTGTGGAGCCTCCCCATGCGTGCGGGGCTGGTTCGGTTAGCGGGATCCGATAGATCGGTGTCCGGTTGC G [81333] 81502 27 85.2 0 ......C...G....G..........C | ========== ====== ====== ====== =========================== ============================================================================================================================================================= ================== 6 27 95.1 59 TCTCCCTGCACGCGCAGGGATGGTTCG # Left flank : CCGGGTGAAACAACTGGAACCGGTTCGCGTACCGGCTGCAGTACTCGTCTACCCGGTCCGGGTCGAACTCCCCCTTCTCCAGCAGCTCGTACCGGCTGTCAGCGTCGATGGCGTCAAGGCCGGCGGCGCGCAGGCCGAGAACGTACAGGATCCGCAGCAGTACAGATTCGGCTGGCGGGACACCTAAAGCGAGGCGCTGGATATGCCGAGCCTGCACCTGGAGATCGCGCAGCCCGACGGTGTTGTCAGTGCCATCCACTAGCGTCACCGGAATCCACGGTTGGTGGAATAAGTCAGGCTCAGACACGGAGAGTGGAGTGTTCGTCACACGAGCGACGCTAGACCAAAAGGATGATTAGCATCAAGCCCGATCACCCCCCTCATACTCCCCCTAACCTTGAACTAAGGTCAGCAAGCCGCCGCGCGATGAGCAACCTGCCTGACTCGAAGGTTGATAACGGAAGAGCAAAGCACCTCTAACCCTGCAGGTCAGCAAGGGA # Right flank : CGTTTCCTTGCGTTCGCACGTGACACGTGCGTTCTCCCAGGTGCCAGGGCTGGTTCGAGCCTTTCTTCAGCCGGGACAGGGGCACGGTCGAAGGCATCACTACGGTTGTCCCGAGCAACGCATCCCTCACACGCCACTTTCGCCTGCGAAGGCCTGACGCTATCTGTCCGTCTGCCTGCTCGGCGGATATGTCTGCTGGCAGGATGGGATGAGGCGACGGAGGGTGGGGGCTCTTGCGGTTAGACAGGCGGCGGATTCAAACAGCAGTCCTGGGCAACGCCGACTCCGACCGGCCGCTGGCGCTCCCGCTAGAGCCCATCGAGCTGGACGCTTTCCGCCAGCACCATCAGCGCGACACGTTCTGGTGCGGGCATCTCCTCGGCGGCGTTCTGCCGCCGCTTCCCCTCCCGCTGATCCCAGCTAGCGCCCGCCGTGTGTGGTCGACGCGCGCTAGAGTCCAGCAGCGGGAGCGTTGAGAGACGAAGAGGCGCCGATGTGAC # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTCCCTGCACGCGCAGGGATGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 84411-84561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRKI01000032.1 Streptomyces natalensis ATCC 27448 Scaffold_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84411 29 96.6 32 .........................A... ATCTCCTTGCACATCGGGCAGACCGGGTACTT 84472 29 100.0 32 ............................. GCGTCGTAGACCTCGGCGAGCCGCTGTTCCTG 84533 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTCCGGTCCGGGTGTGCGAGGGACGGCCG # Left flank : ACCGCACGACTGTGATCTTCGAGTTGCTCGCGTGGGGGCTCGTGTTCGGACTTGGAGTCGGAATTGTGATCGGGCTCTGGGGTGAGTTCGTTCAGGGGCTTGTGCTCGGGCTCCATTCCGGGCTCGTATCCGGACTTGCCAACGGCCTCGCGTTCGGACTCGTAGGGGGGCTGGGAGGTGGGCTCGGATACGCGCTCAGTGCGACCGCATGGGGGCGATGGGTGGTCCTTTCACGCATGTGGCTGCCGCTGACCGGGCGGTTGCCGTGGGCGGTGATCGCCTTCCTGGACGACGCCTACCAGCGAGGCGTGCTGCGCCAAGCGGGCGCGGTCTACCAATTCCGCCACGCTCGACTGCAAGACCATCTAGCCCATGCCTTTCAGGCACACATGGACGCCAGGCCCAACAGCCTGGCGCCACCTCGGCGGAGCAACCCGCCGACGTCCCCCAACCCGCACCACGAACAGGCAAAACTGTTCTGAAACCCCAGGTCACGAAGT # Right flank : GAAAGCCGCGACTTCATGGAGCGGCTTGCCATGATCGGGCCCCACCACGGCGGCCACGCACCGATGGCTGCTGTCCTGCTCAGGCGATCGGCACGTCCAGTGTGGTGTCCGGGCATGCCTCGGCCAGCTGCTGAAGCGCCCGATGCTCGGCGTCGTCCGCGGACAGAGCCCACCGGGTCTTCACCGACACCCAGTCGTCCAAGTACTGGCACTTGGCGTCCTCGGCCGGCGGCATCCACTCGGCCACGTCCTTGTCGGCCTTGCTGCGATTGGACTTCGCTGTCACCGCCACCAGTGACCTGGGGAACGCCAGGTCGTTGGAGTACAGCTCACGGCGCTTGGCCGTCCAGTCGTAGGCCCCGCTGTCCCAGCTTTCTGCGAGCGGGACCATGTGGTCGATGTCCAGGACGGATGGGCCGTTCACGGCGGTGTCGTCGTAGTAGGACCACCACTGGCCGCCGGTCAGCTTGCAGCCTCTTGCCTGCACCGGCGCCTCCACG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGTCCGGGTGTGCGAGGGACGGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGGTCCGGGTGTGCGAGGGACGGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 601-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRKI01000017.1 Streptomyces natalensis ATCC 27448 Scaffold_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 600 29 93.1 32 ........................G...A TACGAGTTCAGGGTCAGGCAGCCCGCGCGGTC 539 29 96.6 32 ........................G.... GACAGCACGGGCGCCACGGTCTACGTGACCGT 478 29 96.6 32 ........................G.... AACGCCGCCGAGACCGCGTGGAGGGCAGACGG 417 29 96.6 32 ........................G.... CGGCGCATCCCGGCGATGGGCGCCGCGCTCAT 356 29 100.0 32 ............................. GACACGTTCGCCGGGCCCTCCGGCTCGCCGCT 295 29 96.6 32 .............G............... TTGCCGGCCAGCCCCTTCTTCAACTGTGCGAG 234 29 100.0 32 ............................. CCCGACGGGTGCATGCCGCAGCTCCCCGTCGA 173 29 96.6 32 .....................G....... CTCACCACCAACGGCATCTGGGGCTTCGAGAG 112 29 100.0 32 ............................. CCCAACGCCCAGACCATGGGGGACGGCATTGT 51 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTCCGCTCCGCGCACGCGGAGATGTTCCG # Left flank : GTGGGAAAGCAAGCCCTACACCCCTCTCCTCGACCGCATCGAAACAGGCCAGCGCTACGCCTTCCGCCTCACTGCATCCCCCACCTACCGCACAGCATCCCCCGCACCCGACCAGCGCGGACGACGCCTCCCCCACACCACCGCACGCCACCAACTGCGCTGGCTCACCGACAAAGCCCTCAAACACGGCTTCACCATCCCCCCAGCCGGCGCACCCGACGACATCGGCCCCGACGGCGAAGTCCCCCTCCGACTCCAGCTCCGCCACCGCGGCAAAAACACCTTCGGCAAACGCGACCACAAGGACAAGCCCATCCGGGTCGCCCTCACCACCGCCACCTACGAAGGAGCCCTCGACGTCACCGACCCCCAAGCCCTCCGCGCCCTCCTCACCACCGGCATCGGCCAAGGCCGCGCCTACGGCTGCGGACTCCTCACCCTCGCCCGCCTCAATAAGTAAAGAATGGGCAAAGTGCCCCCAATGGTGCAGGTCGCGAAGG # Right flank : GTGCCGGCCACCGAGACTGATGG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCACGCGGAGATGTTCCG # Alternate repeat : GTCCGCTCCGCGCACGCGGAGATGGTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCACGCGGAGATGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9407-12395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRKI01000017.1 Streptomyces natalensis ATCC 27448 Scaffold_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 9407 28 100.0 33 ............................ GAAACGTGATCAGTTGGCCAGTCAGCAGGACAA 9468 28 100.0 33 ............................ GGGCCGGGACGGCCGGGGGCGTACGTCTCGGCG 9529 28 96.4 33 ....A....................... CTCCCGGATGAGCGTGGGGCCGATGTAGCAGGC 9590 28 100.0 33 ............................ GACTCGGGCCGCGCAGATGGTCCGCCGTACCCT 9651 28 96.4 33 .............G.............. GATGGCCGACACCATCGTCATCTACAGCATGAA 9712 28 92.9 32 ...A....................T... GGGTTCAGGTCACCGCCACCCTGTCCGTCCGC 9772 28 82.1 33 ..T.......G...T.........AA.. GGTGCACCGCTTGCCGTTGTACTGGGACAGGAT 9833 28 85.7 33 ..............C..A......TA.. GATCCCGGGCATGGACGGCCCGGTCTCCGAAAT 9894 28 75.0 33 ..G...C.....T.C......C..TT.. GTAGTTCGACAGCGCCCACTCCAGCTGCGCGCC 9955 28 92.9 33 ..G......................T.. GAAGGTCGTCGGCCACACCCACGCGATGTCCGC 10016 28 71.4 32 ..A...C..A.TG.C.........TT.. GGGGCACAGGATTGAGGGATGACTTCGCCGTC C [10021] 10077 28 78.6 33 A...........TCC.T........T.. GGGGTTCTTCACTCCGTCGTCGCTGACCAAGTC 10138 28 71.4 33 .........A..TCC........ATTT. ACGGCCGTGGTACTCCAGCTGGACGTTAAGGAT 10199 28 85.7 33 .......T......T.........TT.. GCCGTTCGTCTTCGGATAGAAGGTGTCGAGAGG 10260 27 82.1 33 ....T.......-.T.........TT.. GGCGAACGGCGACCTCACCGGCCCCGAGCACAC 10320 28 89.3 33 ..............T.........TT.. AGCGGGGGACTGGCACGACCGGTACGCCCCGAC 10381 28 85.7 33 ...........A..T.........TT.. GTTGATCGGCATGCCGTGACCGAGGGCGAGGAT 10442 28 89.3 33 ....A.........T..........T.. TCGGATGTGTGAGTACGTCGGCATCGCTCGCCG 10503 28 92.9 33 ........................TT.. GGTCATTCCTGCCGCGGGCAGAATCGGGATCCG 10564 28 85.7 71 ........A.....C.........AT.. GGTGGGTGGCAGCCCGCTGATCCTCGCCGTCGTGTCCCGCCTCTCGACCAAGTCCCCGGCACTGCCCAGGC 10663 28 89.3 33 ......G...............G..T.. GGAGGACCAGGACCCCAAGGGGAGTGTGGACTC 10724 28 89.3 33 ...........T............AT.. GTTGAACGTGCCGAAGACGGGTACGCTCACCTC 10785 28 82.1 32 ...T........T.C........T.T.. GCTGCGCCTGCGACCCAGTCCCCCGGCAGGCG 10845 27 82.1 33 ......-....T..C.........TT.. CAGCGGCCACAACCTGGCCAAGATCTTCCCGCG 10905 28 89.3 33 ............TG..........T... GTCGCCCCGACACAGACCCGGCTGAAAGCAAAC 10966 28 100.0 33 ............................ GTGGAACCTGAACGACACTACTGACCTCACGGC 11027 28 89.3 33 ........A......A........G... GACGAGGTCACGGATCCGCTCGACGGTGACGCC 11088 28 85.7 33 .......................ATTT. GCTGCCCGAAAGCGAGTGGAGCTTCACCAGCTC 11149 28 82.1 33 .............T.......G..TTT. GTACGCGGTTCCGCCGGGGGTCACCTTGGGGCT 11210 28 92.9 33 ........................TT.. GCAGTACGGCACCGTCACCGGACGGTTCAGCTC 11271 28 89.3 33 ..............T.........TT.. GTTCACGGTGCTGTTGCACCTCTGCTCGCCGTT 11332 28 85.7 33 ..............T..A......TT.. GACGCCGTGGTACGTACGAATCCCGAGTGACCT 11393 28 85.7 33 ...........T..C.........GT.. GTTCTCCAGCGTGCGAGCCAGGCGGTCCCACGC 11454 28 85.7 33 .............GT.........TT.. CTGCACGAACTGCGGGGCGGCGGTCACACAGGG 11515 28 92.9 33 ....A....................T.. GTACGGGGCGGCCGCCTTAGCCGCGAGCTCGTT 11576 28 96.4 33 .........................T.. GAACTCGACGCGGATGCCGCCGAGTTCATCCGC 11637 28 89.3 33 ...T..........T..........T.. GTACGCGATCCAGCACATCAAGGATGATCGAGC 11698 28 92.9 33 ........................TT.. GGCCCGGCGCAGTGAACCAGTCACCGTCTACGC 11759 28 100.0 33 ............................ CGGTGTGGGTCGGTGGTTCCAGCGCAGGAGGTA 11820 28 92.9 33 ...........A....T........... GCACTAACTCGCTGTCGGCATCTACCGACCCCA 11881 28 82.1 32 ............A.T.....A....C.G TTCGGCTTCGGCATCCGGTTCGCCGGCTTGTC 11941 28 82.1 33 ...T........T...T.....G.T... GGGCTCCAGGTCGCCGCCACCCTTTCCGTCCAC 12002 28 82.1 32 ..T.......G....C........AA.. GGTGTACCACTTGCCCTTGTACTGAGACAGGA 12062 28 78.6 33 TG.........TT.C..........T.. GTCGACCTTCGGATCGATCGCCACGCACTGGGT 12123 28 82.1 32 ...T........T.A..........T.G GATGTCCCACGGTTCTCCACGCACGGACCAAT 12183 28 78.6 33 .G..........T.C.A..C.....T.. CGGGTACGAGCACATCCGCGAGGAGTACGGCGT T [12187] 12245 28 75.0 33 .........A..T.C....C.G..AT.. CGACAACGCTCTTGCACGGTAAGTCCGTGTACC TC [12259] 12308 27 71.4 33 .C.T...-....T.A........ATT.. GCCCCACAGGTACCGCTCGGTTAAGGAGCGGAT 12368 28 85.7 0 .........T....T.........TT.. | ========== ====== ====== ====== ============================ ======================================================================= ================== 49 28 87.0 34 GTCCGCTCCGCGCAGGCGGAGATGCGCC # Left flank : GCACGTCGCTGCACATCCAACCCGGCGAAGGGAGGCGTCGCCTTGCCCAGGTCGTGATCAGCCGCCAGCCACGACAAACGCGCCCGCGCCGACTCCCCGCACCCGCCCAGATCATCGGCCAGAAGCCTTCGTACCCGCTCCGCCAGCAGGTGATCCCACAGCCATCCCCCCGCATGCCCGCTGTCCCACACATGCGCGATCAGCGAATGCCACGACGCACCAGGAGGCACCTCCCGCCCCCACCCCTTACGCCAAGTCTTGGCCCACAACAGCCGCGCCAACTCCGAAACCACCAACACCGCCAGCCTCCTCCCACACTCCCCACAGTCCTACCGGCCACCACTGACAATCCGCCCTCGAAAGCAGCACACGTGACAACCAGGCCAGCAGAGAGCGCTACCGTGAACAAGCCAACCGATGCCACACAGCACCCGGCACAGAACCACACGCACCTTGATAACGACACAGTAAAGACCCCACAAAAGCGCAGGCCGTGAAGG # Right flank : CGGAGTCGCACCTCCTCCTTCCCCTGTCCGTCTAGGGCGTGTACCGAAAGTCGATCTTCGTCGTGAATGATCACGCGGTGTGGTGCGTGGTGACCTGACGAGCGACTAGTGGGCACGACTGAGGCCGCGTTGTTGCTGTACAGCATCAAGTCAGGCCGTTCACTGGATGTCAGTACCGCGTGGTAGCCATGCGTGCATGACGGATACGACGTACGACGAATGGCTGGCAATCATCGATGAGTTCGCCGAAAGGCTTGACCCTCGGGAACGGTTGGCCTGCCTGTTTGGCCTGATGGCTCCCTTGCTCAACCGCATCGAGCGAGAGGACGAGGAGCTGAGCGACAACCCCGTCCTGTCGACCCCGGACGCGGTGCATGACCTGCGCAAGGCTGCCGCAGGAGAGCCGGTCGACGCCGACGCGGTGTACGAGCAGTTGACCGAGGTGGGTCTGTGCTACTCCGAGGACCAGGCCCCGGAGCGGCACCTCGTGTCCCAGTCGG # Questionable array : NO Score: 4.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGATGCGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [37-50] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //