Array 1 57542-54706 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLR01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712453, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57541 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 57480 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 57419 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 57358 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 57297 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 57236 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 57175 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 57114 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 57053 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 56992 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 56931 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 56870 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 56809 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 56748 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 56687 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 56626 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 56565 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 56504 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 56443 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 56382 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 56321 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 56260 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 56199 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 56138 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 56077 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 56016 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 55955 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 55894 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 55833 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 55772 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 55711 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 55650 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 55589 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 55528 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 55467 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 55406 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 55345 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 55284 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 55223 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 55162 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 55101 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 55040 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 54979 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 54918 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 54857 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 54796 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 54735 29 93.1 0 A...........T................ | A [54708] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76153-74049 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLR01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712453, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76152 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 76091 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 76030 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 75969 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 75908 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 75847 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 75786 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 75725 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 75664 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 75603 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 75542 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 75481 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 75420 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 75359 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 75298 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 75237 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 75176 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 75115 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 75054 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 74993 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 74932 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 74871 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 74809 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 74748 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 74687 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 74626 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 74565 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 74503 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 74442 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 74381 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 74320 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 74259 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 74198 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 74137 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 74076 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //