Array 1 2698759-2697134 **** Predicted by CRISPRDetect 2.4 *** >NC_018586.1 Listeria monocytogenes SLCC2540, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2698758 36 100.0 30 .................................... GCTTTAGTCACTCTTATAGCAGGTATTGTG 2698692 36 100.0 30 .................................... ATGTGCTTCAAATGGCTGTTTATAAAGCTA 2698626 36 100.0 30 .................................... ATGTGCTTCAAATGGCTGTTTATAAAGCTA 2698560 36 100.0 31 .................................... TAGCACCTTGTCTTGACACGATGCAAGGTGG 2698493 36 100.0 30 .................................... TATTCGAGAGCAAAGAACACAAGGCGTTTA 2698427 36 100.0 30 .................................... ATAATGACGTTTACTATATTGATGGTCAAC 2698361 36 100.0 30 .................................... TTCGACAAAGTTATCAAACTGGATTGTTGC 2698295 36 100.0 31 .................................... CACGCGATAAATTTCACTAGTTTCGATAATA 2698228 36 100.0 30 .................................... TACTCCACCTCCTTTCCCGGTGCTTTTAGA 2698162 36 100.0 30 .................................... TGACCTCTACCCCATTGGATAATAGGTATT 2698096 36 100.0 30 .................................... TTCGGAGTTCTGAATATTTCCGGGTGTGTT 2698030 36 100.0 30 .................................... TGCTAAAGAAGGAACGTTAATCACGACAGA 2697964 36 100.0 30 .................................... GATGCGCTTGCTATAGTTCGCACCACTCCA 2697898 36 100.0 30 .................................... ATTGTGACACGTTTGTACAAGTCTTGACTT 2697832 36 100.0 30 .................................... GCCTGATCCATCGATCCAGACACATCCATC 2697766 36 100.0 30 .................................... TAAGTCTTGTCTAGCATCTACTATCTCGCT 2697700 36 100.0 30 .................................... GAGTTTGCACAAGCTAGTCCAAGAGGTTAT 2697634 36 100.0 30 .................................... ACTTGGCACGGAACTGTTTAGAGTCGGTTT 2697568 36 100.0 30 .................................... ACTTGGCACGGAACTGTTTAGAGTCGGTTT 2697502 36 100.0 30 .................................... ACTTGGCACGGAACTGTTTAGAGTCGGTTT 2697436 36 100.0 30 .................................... TATTAAAGAGGGGAAAGCACCTAAAAACTC 2697370 36 100.0 30 .................................... CGGTAATGAGCTCGACCAGAAGTTAGTCTT 2697304 36 100.0 30 .................................... TGGAGCGTTGCCAGCTGTCATTGGTTTAGC 2697238 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 2697172 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [2697137,2697140,2697145] ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACTGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //