Array 1 3890-6918 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHA01000011.1 Vibrio cholerae strain N2769 NODE_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3890 28 100.0 32 ............................ CCACCTCCTCGCCTTCCACCAGCGCCCAGGCT 3950 28 100.0 32 ............................ ACATCAACGTACTGCACACCGATATCGATAGC 4010 28 100.0 32 ............................ ACTTTCAAGCAACTTTTGGAAGGTAGCAGGAG 4070 28 100.0 32 ............................ GTTCTGCGATTTGGCCAAGGTTTTTCACTTCT 4130 28 100.0 32 ............................ TCGCGGCGCTCGACTCACATGAGGACATTACC 4190 28 100.0 32 ............................ CCTTTCGCTACTTTCTGCGCCGCTTTCATAAT 4250 28 100.0 32 ............................ ATAGCCGCCGCCATAAATTAAGATGCCTTAGC 4310 28 100.0 32 ............................ GGCACCGCCTTTTTGGTTAAGAATGGCTATCA 4370 28 100.0 32 ............................ TTAAATTGTCACCGGGCGTTGGGTCGGGATTC 4430 28 100.0 32 ............................ ACAATGTTTGTCGGCGTGGGCGATGGCCTGTT 4490 28 100.0 32 ............................ ACTCTTGCATAGTGCGCATGCGCTCGGCTTCG 4550 28 100.0 32 ............................ GTACTCGGCCAAACCATGACCGCCGACAATGG 4610 28 100.0 32 ............................ ATCAAAAACTGCAAATCGGGTTGTGTATTCAC 4670 28 100.0 32 ............................ ATCGCAATCACTCCAGTCAGTGAATGTAACGC 4730 28 100.0 32 ............................ TGACGTATTGCCGAGGGGGATTGCTGGCTTCG 4790 28 100.0 32 ............................ TACTCAAAGTGCAAATGTCGTAAGGGAATGAT 4850 28 100.0 32 ............................ TGATGGACGCCCACGGCGAGGCCAATCGCACC 4910 28 100.0 32 ............................ TTTCCCTTTGTACTGGTGGCGGCACTGCTGAC 4970 28 100.0 32 ............................ CTCACCATGGGTAAGCAAATCTCCATGTATTC 5030 28 100.0 32 ............................ TCACGATGAACGTATCCACACTAAGAACAAAT 5090 28 100.0 32 ............................ TTGAAGAAATATCGAACAAAGAATGTGAAATC 5150 28 100.0 32 ............................ TAACACACAAAAGGTGGCTTTGCTCAGTGAAG 5210 28 100.0 32 ............................ TGACATCGGTGTAGAAATTGAAATGCCTAGCA 5270 28 100.0 32 ............................ ACTATTGAGGGTAGTTCTAAGTGATCGAAAGA 5330 28 100.0 32 ............................ ACGGAAGCTGCTCTTTGAGCCATTGCTTAACT 5390 28 100.0 33 ............................ TGGACGAGAAGACGGTACGTGACATCTTCAACG 5451 28 100.0 32 ............................ TAGTTCGTAATCCGGGCAAACCAGAAAAAGGC 5511 28 100.0 32 ............................ ACTCTGGAGCATCTTCTGGCAATGAACGAACT 5571 28 100.0 32 ............................ AGAAAGCAAGCTGAGGATTACTGGGAAAACTG 5631 28 100.0 32 ............................ GCTACAGAGAACGAATAAACATTTGCCTGACT 5691 28 100.0 32 ............................ AACTGGAAGAGAATGAAGATAGTTACGTTATC 5751 28 100.0 32 ............................ GTTTAAACTAATGGCTTTATTGATGCTTGGGA 5811 28 100.0 32 ............................ GGAAGATATTTTATTGGCGGCAATGGCTGCGG 5871 28 100.0 32 ............................ ATCAGTCGAGGAACCAAGGCCAGTAAAAGCAC 5931 28 100.0 32 ............................ CAAAGGCAGCGGCCACAAAGCCACCTCCGCCG 5991 28 100.0 32 ............................ CGATTAAAAAGGCCACCAAAGAGCAGTTGCAA 6051 28 100.0 32 ............................ AAACCAAAGTACACTATCTTTAATAGTGTACT 6111 28 100.0 32 ............................ CAATAGAGCCAAGTATCAAAGTGGTTGTGTAT 6171 28 100.0 32 ............................ TCGACTTTCATCATGCGAAATGGCTTAGGCAG 6231 28 100.0 32 ............................ AAACAGGGCAGGTCTTTTACCCTGATATGGTT 6291 28 100.0 32 ............................ ACTAGGAGGGTTTCTTTTACCACCCGTAACTT 6351 28 100.0 32 ............................ AACAACGATTGTATCGGTCATGCCTCCGCGAG 6411 28 100.0 32 ............................ CTTAGTTGGCCGTCACGTTCATTTCTTCAATG 6471 28 100.0 32 ............................ GTCATCAACTGATCACCAAAAAGGAACTGTAA 6531 28 100.0 32 ............................ ATTATAGTCAATGAATTCAGAACCAGACCACC 6591 28 100.0 32 ............................ GCTAAGAGTGAATGAGAAAACCATGCAAGTTA 6651 28 100.0 32 ............................ TTTGACGTTTTGCGTCATAGTGCTGCCTGCTG 6711 28 100.0 32 ............................ TACAAAATGTCGTCTCTTTTGATTGATCGTGT 6771 28 100.0 32 ............................ GCTTGGCGCCGTCCTTCTGACCCTAACTCTTT 6831 28 100.0 32 ............................ ACTGAGCGCGAACATCACTGGAGCGTAACTAG 6891 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 51 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTTCCACACAGCAAGTTTGGTTTCACAAAAGGCTGCATCATCGCTGTGATCTTGCTTTCTTTGTCGCGGACTCTTAATCGTGGCCAACTTAGCCTAGATCGTTTTAAGTTTTGGCAGCCAACTTCACAGCTTTTGGCGTTGGACGTGTGTTTGTGAGATGCTTCTGCGTAAAATGGCCTTCAAATAAAGGTGTTTAAAAATCATTATTAAACAATAGGCTACGAAGCTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGCTTGCAGTTGTTGTGTTTAAGTTTAGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAACTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATAGTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTACGACTGTTGTGTTTAGGTTTGGTTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTATGCTTAAACCATAAAAATCAGTTGGTTGTGTTATCGATTTCTTTGGCATTTCGTTCGGGTTTTTTCGGCAATTCAATATTGTTTGTCGCTGCCTTATGAAGCGGCAATGTGTCTGGCGCTATAAATTCTGTGTTATTGCCTCATTGGTTTTTTGAGTCCACGCGAGGTGAGTTTTGCTCTCTCAAGTCGCTTTGAGCAGTTTGGTGCCTTTACTTATAGGCTTAAAGTTTGTTGGCAATTGAGCATTGTTTTGCGCTGCCTAATGAAACGGCAATGTGTCTGTCGCTGTAAATTTCAGTGTTATTGCCTCATTAAGTTGTCGCGCCCATGCGTGGTGAGTGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17293-20322 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHA01000044.1 Vibrio cholerae strain N2769 NODE_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17293 28 100.0 32 ............................ GTATTGACTCGATGCACGAGACGTACCGTCTA 17353 28 100.0 32 ............................ CGGACTCAGAAGCGCACGGGGTTGCCATCTAC 17413 28 100.0 32 ............................ TGTTGGAGCAAAAGTTAAATACTTTCCAATTC 17473 28 100.0 32 ............................ GTAACCGGTTGAGGCGATGCCGGAATTAAGCA 17533 28 100.0 32 ............................ TAGAAGGCGATGCGCGTACCTATGAAGCTGGC 17593 28 100.0 32 ............................ ATTGCATCAAGTCGATCTTGCAAACTGGTTTC 17653 28 100.0 32 ............................ AATTGGAGGAGTATGCTTGAAAACTGTAATGA 17713 28 100.0 32 ............................ ATCCGAAAGAATTTGTTCCTGATTTTCCTCTA 17773 28 100.0 32 ............................ GTAATGTTGTCAACAGGAAGGCCTGCTTCTAG 17833 28 100.0 32 ............................ TGTAGTGGAAGCCTTTGCCTTGAGTCTTATTC 17893 28 100.0 32 ............................ ACCACAACCAGAGTTATAATTTGCTCTTACAC 17953 28 100.0 32 ............................ GCAAGGGGGAGGGTGGGTCAAAACCTCCCTAC 18013 28 100.0 32 ............................ CAAGAAAAAAACCGAGGCAGAAGCCATTAAAG 18073 28 100.0 32 ............................ TCAAGCGGTCGCAAAAGCGTATGCGGATGCGG 18133 28 100.0 32 ............................ TCTCTGAGAACGTCAATGAAGTAATCGATACT 18193 28 100.0 32 ............................ TACAGCAAGATAGTTGCTATCATTCCTCTTAT 18253 28 100.0 32 ............................ AGGCATCACTCAAGTATGTTTGGATGCTGCGT 18313 28 100.0 32 ............................ TAAATTCACATAGGTATCGCTCCAGTCGTAAC 18373 28 100.0 32 ............................ AATGAATGAAGCGAGAACCATGAAGATGTTCT 18433 28 100.0 32 ............................ TTACTTTTTCAGTGTTTCAGTAAAGTATTTTT 18493 28 100.0 32 ............................ GGTATTGTCTACAGGACGTTATAATATTACGA 18553 28 100.0 32 ............................ CGGGGAACGTTGTACCGCACCCGCCCGTCGAC 18613 28 100.0 32 ............................ ACTTGATACGTGAGTGAACGCGCAAGTAAATA 18673 28 100.0 32 ............................ ATTATGTTACTCGCTCTCTATTAATCGCATTC 18733 28 100.0 32 ............................ GTAAAATCTTTGAATCGGGCGCTTATGTGGCG 18793 28 100.0 32 ............................ GTTAAGCGTTGCGACCTTCATGTAAAGCATTG 18853 28 100.0 32 ............................ ATGCACAAGCAAGGCTTCGTGAAGAACGGCAG 18913 28 100.0 33 ............................ ATTCAAGCAGCAAGAGCAAGCGCTGTACTACAT 18974 28 100.0 33 ............................ TCAGCGAGAACAACTAAGGTCAATTTCCATCAT 19035 28 100.0 32 ............................ GCTCGCGCCGCAGGCCAGTGGGAGCGCATCGA 19095 28 100.0 32 ............................ AGAAGGATTGGCGCGCCATCAGTGGGCGAGTT 19155 28 100.0 32 ............................ CTTGTCATCGTCACTGGCTGCCTGATGGACGC 19215 28 100.0 32 ............................ ATCATTTCAGGCGACAGCACACCCATGTTAAA 19275 28 100.0 32 ............................ AAGAATGACGCTCAACAGTGGCTGTCTGTTGT 19335 28 100.0 32 ............................ TTAGTGCGCGACTTTCGAGCTTTGCTCGATGC 19395 28 100.0 32 ............................ ACGCACCCCATTAGAGCTGAAGTGGTCAGCAA 19455 28 100.0 32 ............................ AGATGAAGATTTGTGCGCAATGGCAAAGGATA 19515 28 100.0 32 ............................ GTCTCAACTATGACGGGACGATGGCGCACTTT 19575 28 100.0 32 ............................ TAGAATCACAGATATTGAGCTAGGCATTAGAC 19635 28 100.0 32 ............................ TCTCATCACGATTTAACTTTCACGGAGTTAAT 19695 28 100.0 32 ............................ TAAGAGCCTACCTAGAGAAACGTTCTTCTTCT 19755 28 96.4 32 ...........T................ TTTTGCACCAATAGGGTTAAACTTTATCTATG 19815 28 96.4 32 ...........T................ CTGCGGAGGTAGATGAACACGGAAAAATCAGG 19875 28 96.4 32 ...........T................ CATAACGTGCGCCAGTACGGTGATGTTTACAT 19935 28 96.4 32 ...........T................ TTAGTTCATGAGGGTAATATTAATCGCCTTTC 19995 28 96.4 32 ...........T................ AAGCCGCGGAAATCTTTGGGTAAGAAAGCTTA 20055 28 96.4 32 ...........T................ ATCAGATGAAGTTGCAGACAAGATATTCACAC 20115 28 96.4 32 ...........T................ ACCAAGCTGCGCGAAAAGCGCCAACAGCATGG 20175 28 96.4 32 ...........T................ GTTGTGACATTCTTGGAGAACGTAAACCCATA 20235 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 20295 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAGTGTTTAGTGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //