Array 1 182737-178809 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWMF01000002.1 Klebsiella pneumoniae strain VRCO0410, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182736 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 182677 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 182616 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 182555 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 182494 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 182433 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 182372 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 182311 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 182250 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 182189 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 182128 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 182067 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 182006 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 181945 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 181884 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 181823 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 181762 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 181701 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 181640 29 100.0 32 ............................. GACCTGTCATGACGGAAATAGCGGTTATAAAC 181579 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 181518 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 181457 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 181396 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 181335 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 181274 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 181213 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 181152 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 181091 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 181030 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 180969 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 180908 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 180847 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 180786 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 180725 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 180664 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 180603 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 180542 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 180481 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 180420 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 180359 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180298 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 180237 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180176 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 180115 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180054 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 179993 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 179932 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 179871 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 179810 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 179749 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 179688 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 179627 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 179566 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 179505 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 179444 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 179383 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 179322 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 179261 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 179200 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 179139 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 179078 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 179017 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 178956 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 178895 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 178837 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //