Array 1 64266-60875 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLC01000001.1 Myxococcus sp. AB036A NODE_1_length_281163_cov_41.9732_ID_5501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 64265 37 100.0 34 ..................................... GCTCCAGCGGGAGCCAGTCCACCACGCCGCGAAT 64194 37 100.0 35 ..................................... AAGCCAGAGACAGACGTTCTCGCCTACCTCAAGGA 64122 37 100.0 35 ..................................... TCAGTCCCTCCAATTCCTCCAGCAGCGCGGCGCCG 64050 37 100.0 35 ..................................... CCTTGACGGTGGCCTACGCCCAACGGCACGGCCTC 63978 37 100.0 36 ..................................... TTGCAGGTGCGGACGAAGAAAGCGGTCTGCGTCATC 63905 37 100.0 34 ..................................... ATCCCGCCCCTCTCCGGCGCCAAGAAGTAGTCAC 63834 37 100.0 35 ..................................... GATGCAGGAGGTGGAGGAGCTGCTAGCGCGGCGCA 63762 37 100.0 32 ..................................... CCTGGAGAGGATGCTGTCCACCCAGGACCCCG 63693 37 100.0 33 ..................................... GGGTGGCAGGGGATGAGGCAGGCCCAGCAGGAC 63623 37 100.0 35 ..................................... GGCGCGCCGTGGTCGCCACCCCCGGTCCATCGATA 63551 37 100.0 34 ..................................... GAGCGATTGGCGTCCGAGCCCTGGCATGTCACAT 63480 37 100.0 35 ..................................... AGTAGTTCACCCGCCACACACGAAAGGACGTCGAA 63408 37 100.0 36 ..................................... AGCGTGGCGTCGATGCCACCCACAAACGCGTGCATT 63335 37 100.0 36 ..................................... TTCGCGGTGCGCGCCTCGGCAGCCGCCGCGTCCATC 63262 37 100.0 34 ..................................... ACCTGCGACCAGCGCGCGGCCTCCGAAATCGGGA 63191 37 100.0 33 ..................................... TGGTAGGCAGCCGCAAGGGTCCAGAAGGGCTTC 63121 37 100.0 32 ..................................... GAGGTGGAGGACCGGACCAAGGCGGGGTCCGT 63052 37 100.0 35 ..................................... GACGCAGTGAAGGCCGACGACTTCGACGGCTTCCA 62980 37 100.0 33 ..................................... CCTCAGCCCCGACGCCCGGCATGGACAAGCATG 62910 37 100.0 33 ..................................... TCGTTGACGGCGACGACCTCGGACTGCGGGTGG 62840 37 100.0 35 ..................................... CGGCTGGAGCATCTGGAGTCGCCTCCGACGACAGT 62768 37 100.0 32 ..................................... ATGGTGACGGGAGGGCTGCGGGCAGGTCCGGA 62699 37 100.0 35 ..................................... GGCGCGCCGTGGTCGCCACCCCCGGTCCATCGATA 62627 37 100.0 36 ..................................... AGCGCGTCCTGGGCTCGCCGCTGGATGCTGCCGACA 62554 37 100.0 33 ..................................... ACCGAGTCCTTCGAGCGCTCGCCCTTCGACTTG 62484 37 100.0 34 ..................................... CGAATAGTCCGTCTGCGTCGCCCATTCGCGGTCC 62413 37 100.0 32 ..................................... TTCCGGTAGTCGAGCTCAGCCTGTCGCGCCTG 62344 37 97.3 34 .............C....................... GTGTATAGGTTTGGGCGTACATGGACAGGAGGAC 62273 37 100.0 33 ..................................... ACGAACCTCGGCAACGCGCGGCAGAAACAGATT 62203 37 100.0 35 ..................................... CCGCTGACGGCTGCCGCTCTGGAGGACCAGCCATG 62131 37 100.0 34 ..................................... TCGTTGGCTAGGGAGATGGTCTCCACCAACGCAT 62060 37 100.0 35 ..................................... ACGTCCGTGCCGCTCGCGGGCGCGGAAGCCGTGGT 61988 37 100.0 34 ..................................... AAGAACCGGCGCGTCAACGGCGTGGGCGGGTGGT 61917 37 100.0 34 ..................................... CGTGAGCACCCGGGCAGCTCGCGCAGCGCAGGTG 61846 37 100.0 34 ..................................... CTCGCGCTGGTCACGCTCGCCATCGAGAACACGG 61775 37 100.0 34 ..................................... TCCAGGTACTCCTGGACCGTCTTGTCCTGGAGCT 61704 37 100.0 39 ..................................... GTCATTTGTGCTCCCACAGGGGCAGGGTGCCGACCGGAC 61628 37 97.3 33 ..G.................................. GTCTTGAACCGCAGGTAGGTCAGGCCGTCCAGC 61558 37 100.0 35 ..................................... AAGATTACGGCGCGCGCGTTCCAGGGCCTGCGGTT 61486 37 100.0 34 ..................................... CGTCGTCAACCACTGCAACAGCACAGCCAGCGTT 61415 37 100.0 35 ..................................... CAGCCCTCCAGCGCCTTCTCAGTCACCACTTCAGT 61343 37 100.0 33 ..................................... CTGTCCTGCCAGTCGTCCGCTTCGTCCGGTGTC 61273 37 97.3 32 .............................A....... CAATCATCGGAGCACCAGCCGAGAAGGAAGTC 61204 37 97.3 36 .................G................... GGGAACGTCGGCGTGCTGCGCATCGCGTCCTGCATC 61131 37 97.3 39 .................G................... TGCAGCTTGTCGAATCCGACGATGCATTTCCCTCTGGTG 61055 37 97.3 34 .................G................... CGGCACCGCTTCGCTCTGCTGCTCCGACTCGGGG 60984 37 97.3 36 ..............................G...... GCCGCGGTGAAATTCTGGGCCGTCACGTCGAGCGTC 60911 37 97.3 0 ...................G................. | ========== ====== ====== ====== ===================================== ======================================= ================== 48 37 99.6 34 GTCGCTCCTCGTGAACGCGAGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAGATTGACCGTGTTGATTTGTTACGACGTGCGGGTGTCGGACCCCCAGGGGCCTCGGCGCCTGCGCAAGATCGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGGTCGTCCTGCGCGCCCGCCTGCTCGGCGCATTCGATTCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAGGACGATGCCCGGAAGACGGAGCATCATGGCGCCAGAGCACCATTGGACGTCGAGGGGCCGCTGGTCCTGTAGGCGTTCGCGAACCGGCCCCGGTGTGCGCTCCGTCGAGGGTTTGCGCTCTTTGAAATCCCGAATAGAATCATGGAGTTGGGCGAGTGTACGTCACGAGCGGCGGGGAGCCTTCGTGGCAGTACGGGCTGGTTCGCGAAATGCGGCTGGATTCCGTAGTCAGAACGCTATTTTGGAGAGGCAGA # Right flank : GCGAGGTGCGTCGGGTACTCACCGACGAGGGCACGTCGCTCTCGGCGAACTCGCCGCTGCTCGTCGCGTTGCCCTTCACGCTTTGGTTGTTTCCGGCGTGAACAATGTGCTGGCGAATGGTCGCTACGTGGGCGCCCGCATCCCCGAGGTGGAGATGCGGGCGATGCATGACTGTGGCTGTGTGCTGAGATAGCGTGCTAATTCATGTTTCAATCCGCACGCCAGTTTGTCGATGGCGTGAGTCGTGTGATGTTAATGAGTTCTGTTGTTGGTGCAATTGGGGATGGGTTCTCGAGGTTCTAGTGAACATACTTGTTGGCCTGGAGGGTGGGGGCATCTGCCGGGGAAGTCCCTCCGCGCTGGCGTAGGGATGAGATGATTAGTTCGATGGCAATGGAGAGAATTTGATATTTGGGTGATGCGATTTGCATTCGTAGTGAGAGGGTGTGTGCCAAGTGCTCAGTGGTGCCGTTTGTGGGGAGCATCGAGACCTCTTTGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGAGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10820-10263 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLC01000038.1 Myxococcus sp. AB036A NODE_38_length_72493_cov_36.969_ID_5575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ===================================================== ================== 10819 34 100.0 38 .................................. AACGCGACCTGCGGCGTCTCTTTGTATCCGTGCACCGT 10747 34 100.0 40 .................................. CGGCGTCTCTCCGGTGGCCGTCTCCAGCAGGGCTGGGGGG 10673 34 100.0 40 .................................. CGGCGTCTCTCCGGTGGCCGTCTCCAGCAGGGCTGGGGGG 10599 34 100.0 36 .................................. TTCTCGGAGGCGACGTCACCCGGCTTGCCATCGCGT 10529 34 100.0 38 .................................. TCCATGTTGGAGATCAGGACGGTCTTCTTCTTCGAGGT 10457 34 100.0 53 .................................. ATCTCCGCGGTAAAGGCCTCCGCGCGCTCGGCGCTCGGCGCTCGGCGCCCGGT 10370 34 100.0 41 .................................. TCGCCAACCTGCGCCGGATTTCGGAGGACGTGACACCGCGT 10295 33 91.2 0 .............................-..TG | ========== ====== ====== ====== ================================== ===================================================== ================== 8 34 98.9 41 CCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : TGACTGTCCTGTTGTCCAGGCGGACCCAGAAGAGCCGTTCAAGAACGAGGACCATATCGTTCCCCTGTATGGTTCCTTGAAGGACATGCTCTTCCTGATGGCCTTCAGCAGGAAGCGGATGGCCCTTCTGGAGCATCGGCGACGGTTCCTCCCTTCACTCGTGAGCAGCGGAACGGGGAATGTCCGAATCGTGGCTCCCTCCTTGGTGGGAGCCATCGACGAGACGCTTCTCCAGCTCGGCTTCCAGAAGCTGCCCTATACCAGCCCACTGACTCCGCTCTACGAGCGCGGTGACGCAGCCTTCTACGTCGACCGTTCTTCACAGGGAGGGGGACTGTCCGCCGAGTTGGCGGCACGAGATGAGCGTGAATTCGGGAGGCTGGTCGAAGTCATCCAGGATTCTACGACTCTTGTATAGTATTACCCGGTCAGGTGCACCAAGCGCGGTCGCCCCGTGTTGACGGATACGGGCGCCATTGCCATCCCAGAGGACGGCAAGT # Right flank : TCCTATCAGAAGATCTTCATTGTAGCCTGGGCCAGCCATGAACGCAGCGCCTCGCCTTCAACCCGGACGGGAGCGTTCTCGTGACCCAGATCAATCCAGGAGGCCTGGGTCGCCTGTAATCCGGAGGCGCCGCGGAGATCTGCCCCAGAAAGCCTCGCTCCATGAAGGACCGCGCCTTCCAGATGCGCATCTCGGAGATTCGCGGACGCGAGGTTGGCACTGACCAAGTAGGCGCCTTGAAGGTCCGCGCCTTGAAGGTCCGCGCCTTGAAGGTCTGCTTCGCCGAAGCTGGCTCGGAGCGCGTTCACCTGCGTCAGAATGGCCCCTCGAAGGAGCGCATAGTCCAGGTTGGCCTTTGAAAGCTGCGCTCTGGAGAGGCTGGCGCCGATGAAAGATGCGGACGCAAGGTTGGCGTGGGCGAGCTTCGTCCTGTCCAGGATGCATCCATCCAAGCGCGCCCCAGGAAGCGCTGCCTCCGATAGATCTCTCGACGACAGGTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 18499-16520 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLC01000038.1 Myxococcus sp. AB036A NODE_38_length_72493_cov_36.969_ID_5575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 18498 36 100.0 35 .................................... GAGGACAGCAGGCGCCCCCTGTCGCGCAGCGTCTG 18427 36 100.0 36 .................................... TTGATGTTGCTGGTGGACGCCTCTGCCACCTGCATG 18355 36 100.0 32 .................................... TTCTCCCCGACTTGGCCCTCGGGAAATAACTT 18287 36 100.0 34 .................................... TAGGAGACCGGCGGCTGGAGCGAGAGCACGTTCT 18217 36 100.0 39 .................................... AGGTTCTTCCCAGTGGCCAAGGACACCGGGCTTGGAGTC 18142 36 100.0 34 .................................... CCGCTTGAGCACGACTCCAGCGGTCCCGGGGGGA 18072 36 100.0 36 .................................... ATGACCCGTTCCACCGGCCATAGCTTCCCGTAGGTC 18000 36 100.0 35 .................................... GACTTGGCGAGCTCGTCCGCCTGCAACTCGCGGTA 17929 36 97.2 37 ...A................................ GCACCTTCTCCGAGCAGTTCTTTCGCCAACACAGCCA 17856 36 100.0 36 .................................... ATACTCCCCTGTCTCCGCTATCCGCACCTCTGCCGC 17784 36 100.0 36 .................................... CAACTCGGGTGCTTGATTGCACCTTGGGGGGATCCA 17712 36 100.0 35 .................................... CTGCAACTCAGGGTGGACTTCGGCGCTGCGGGTGA 17641 36 97.2 36 ..........................T......... TCGGGGCCGCTCTAATCGCCATGGCCTTGGACAACC 17569 36 100.0 38 .................................... TCTCCGTGCCCGCGCGTGGCGGGCGAGTGTGTGGGCCG 17495 36 100.0 37 .................................... CGATGCTGGCCAAGAAGCGCTGGCGCGTCGGTTTGCA 17422 36 97.2 39 ....T............................... CGCACATACCAGTTGCCGTTCGGCTTCCGTCCCATGAAC 17347 36 97.2 34 ...........T........................ TCCTCCTCACCAGAGAGGAGGCCGTCCAACGAAA 17277 36 100.0 35 .................................... TTGTTCAGCTCGTCGCGCCCTCCGGGATGGCGTCG 17206 36 97.2 35 ...........G........................ CGGTCTCCAATATTCATTGCGTAGGCATCGGAGAG 17135 36 97.2 37 ......................G............. CGCATGGGTCTTTCCTTGCTTCGACTCGGGCGGCCCT 17062 36 97.2 35 ......................G............. TACATACCGTACTGATCCACCTTGGCCTTGTAGTC 16991 36 97.2 36 ......................G............. TACGTAGATGCGGCGGCGCCGTCTCCGGCCCTGGGG 16919 36 94.4 36 .G....................G............. CCGTGCCACGGGGGTGCACCTGCGAAGACCATTCGG 16847 36 91.7 36 .G....................G...T......... TGGCGGTCGCGCGGTTTGACGAAGATGGCGGCAACA 16775 36 94.4 38 ....T.................G............. TCTGAGGTGGGCGTCTTGGCTGCCGTGAGTCAGCCGGT 16701 36 97.2 36 ......................G............. CCGCAGCTCCCGCCGCATCCGTCGGGGCCGCAGGAT 16629 36 97.2 36 ......................G............. GCCCTGACGAGCTGGTGGCGGACGACGGCCAGGTCG 16557 36 86.1 0 ......................G......G.T..CT | CC [16526] ========== ====== ====== ====== ==================================== ======================================= ================== 28 36 97.8 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGACCCCAAGCGGTGGCGGAAGGTGCATGCCCTGCTGAAGGGATACGGGGAGTGGCTGCAGCTCTCCGTGTTCCGCTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGACGCCGTGGATACGTTGCTGGTGATTGGGCTGTGTGGCGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAGGCGGACGACAATCAAGCACCTCGCCGTGGCGGAGGCCCGCGACGGCGAAAGTGGCGGATTCCCATGTCGTTTCATGGGGTTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGATTTCATTGGGTTAGGAATTCTTGGTAGGGCCTGAGATGGCCAACCTGGGGGAAGGAGGGGGAGGTGCTTGAAAAGGGGTTTGTAAGGTGCCGGAATTACTGGGGGATTCAGGCGGGCT # Right flank : CCTCCTCGGGCAAACCTCACGAGGTTCCATGGCCTCTTCGCTCCAGGCGATGAACTGCGGCCATTTCTGGTACCCCAAGCAGGTGTGGAGGGGGCCAGCGCGGGCTGCGCGGCCTGTCCACCGGCCTGAAGCATCCCTCGGGCGGCTTTGTCAGCGCCTCTCCTCGGACCCTCTGCTTCCTCCCCGCCACGGGGCCCCTATCACTCTCATGGAGCATCGGGAGGCGGCCGTAGTCAGACAACAGGGGCGTCATGAACGCCCCTTGCTCGCCCGCAGAGTCTTCAGCGGAAGCCAGGTGTCGTCCTTCAGCCCTTATGTCTGGGTATGGCGGCTCCCTACCTTCCTACGAGTCAGCTATTGGAACTAGAATCACGGCAGCAGTCCAAGGGGGGAATATGGTGCTGGTGGACGTATGGGAAGAGCATCTTGACGAAGCCTCCTTTCACTGGGAGCAGTGGGAGCGAGCCCTGGTGGCTCCTGACTTCACGCTGACGGAGACT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 41475-37038 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLC01000038.1 Myxococcus sp. AB036A NODE_38_length_72493_cov_36.969_ID_5575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 41474 36 100.0 36 .................................... AGGCAGTGCAGCGCGGTGTTCTTGTTGAACTCCATG 41402 36 100.0 35 .................................... GCCGTAGTCGTGTACCCGCCGGCCAGGGGGCCCTA 41331 36 100.0 40 .................................... CTGGAGGACGCGGACCGGATGATTCGCGGTGGCCGGGTCC 41255 36 100.0 40 .................................... CGCGACGCGTCTTGCAGAAGCATTGGCCCACTGTTCCAAA 41179 36 100.0 35 .................................... CAGGGAGTGGGCGTGTGCTCCACCAGCTTCACCTT 41108 36 100.0 37 .................................... CAAAATTCCTCCAGGGTTCCGACGAAGGGCGGGTATC 41035 36 100.0 36 .................................... TCTCCGGGCTCCGAGAGCAGTTCGGGCGGGTGACGG 40963 36 100.0 35 .................................... CGTGACAGCACCGTGTCCGAGTCCACGAACGTGGC 40892 36 100.0 38 .................................... CAATCCAGGCCGACGCCCCAGGTGCACCCCTTGCCCAG 40818 36 100.0 36 .................................... GTCGTCTCCAGCCCCGTGTGAGAGTGATTGGGGTGT 40746 36 100.0 36 .................................... TCTCCTTCTGTGTAGGGAAAGGAGGCAGTAACCAAC 40674 36 100.0 34 .................................... AGGCGCAGTGCCTCGAGGATGAGGCCCCATCCGC 40604 36 100.0 35 .................................... CTCACTTGTTGGTCTCCCCGTGGGCAAAGGCGCCC 40533 36 100.0 34 .................................... CGCGTCACCCGGAACGTCGTGCTACCGCTTCCGG 40463 36 100.0 39 .................................... CACCACTTCGCATAGGTCGTCTTGCTCTTCTTGGAGATG 40388 36 100.0 38 .................................... AGCTTGGAGGGCCCACTAGGGGTGGTAAGTAACCCCTA 40314 36 100.0 38 .................................... TTGGGGTACTTGGCCAGCTCCTTCAAACCGCGTCGCTT 40240 36 100.0 36 .................................... CCGCTCCATGCCCGCCTTGCCCTCACGCTCGCCACC 40168 36 100.0 34 .................................... CGGATTCACGCGATGGGCGACAACGATTCGCCGT 40098 36 100.0 33 .................................... ATGACCGGCGCAATCGCCAGCACGATGCTCAGA 40029 36 100.0 34 .................................... CCGACGGGGCCGCCCCAATCCGTGTAGCTGGCCT 39959 36 100.0 36 .................................... GGGCCGGGCGATGCCAGCGCGGTCACAGGATGGCTG 39887 36 97.2 35 ............A....................... ATGAATCCCGAGCGCGCGTACTCGAAGGCGTCGCG 39816 36 100.0 38 .................................... CGTGAGGGCGGACGAATGAGCAACGCAGGTTGGACTGG 39742 36 100.0 36 .................................... TCGAATCCGGCGGGGCCGGTGTGGCGGGATGCGTCA 39670 36 100.0 35 .................................... TTGACGACGGAGAACTCCGCCGTCCCCGCGCCACC 39599 36 100.0 35 .................................... GCGTCACTCCCATCTCGCGCAGCAGTTCGTTAATC 39528 36 100.0 36 .................................... CGGAGGTCGCGAGTATGAGGTGTGGATTCAAAGCCA 39456 36 100.0 34 .................................... TGACCATCGGCGCGATACGCGACAACGCGCACCG 39386 36 100.0 35 .................................... CGCGTGAGCGGCCGAGAAGTGCCCCTCGGTGAGTA 39315 36 100.0 33 .................................... GTTGACACAGACATGCAGGAGTTGAAGCGGCTG 39246 36 100.0 37 .................................... ACGGGGGTTCGCCCTGCCTTGATCTGGCCGTGCCGTT 39173 36 100.0 37 .................................... CGCACCGGCGGAACCGGGCGCGCGTCGAACAGGCCCA 39100 36 100.0 33 .................................... TTGCAGGGACTTCAGGCCGCAAACACCATCATG 39031 36 97.2 33 .................A.................. CTTTTGCGTTGAGCGCCATCGGCTACCTCTTGA 38962 36 100.0 37 .................................... TTGGTTGGAGTCTTCCCCACCATCTCGTCGTCCCGCT 38889 36 100.0 37 .................................... CGGAACTGGTTGATGGTGCCGATCTCCCCCGTGATGA 38816 36 100.0 38 .................................... AAGTCTGCGACTATGGTGATGACGATGAATGACCCGTT 38742 36 100.0 34 .................................... AGCCTCTTGATTGCGGCCTTGGACTTCGTGTTGA 38672 36 100.0 40 .................................... CGGCCCATCACCCTGCCCAGCTTCAATCCCCCATCCCCAT 38596 36 100.0 38 .................................... GCCATGAACTCCTTAGGCGTAGTGGTGCCGCTAGGGCC 38522 36 100.0 37 .................................... CCGCTACTGTCTCACTCGGGTCTGGGATCCAAGCCGG 38449 36 100.0 33 .................................... TGTTCTGGGGCGGGCTCGTAAGGGCCCACGCGC 38380 36 100.0 39 .................................... TCTTGTACGCCGTGACGTCGGACTCCAGGGAGGCGCCCC 38305 36 100.0 37 .................................... TGCTGGAGGTCCGACGTCTGAAACAGCCGTTTGAGCT 38232 36 97.2 39 ..C................................. TGCCAAATGGCTTCGACGTTGTGCGCGGCGATGATTCCG 38157 36 94.4 35 ..C.C............................... GTAACTGTCCCTGTCAGTCGGCCGGATGAAACTGC 38086 36 94.4 38 ..C.C............................... GTGCCCGTGACGATTTCCCCGGGGGCCACGGAGAGGGA 38012 36 94.4 38 ..C.C............................... TGCGCAGGGGACCACGGCTGGTCGAGGAAGATCATCTT 37938 36 94.4 40 ..C.C............................... TTCGGGTGCTGCCAGTTGCCGTGGTGGGGCTCCATGAGAA 37862 36 94.4 35 ..C.C............................... TGTGCCACCCGTCCCTGCATGCACAGCACGCGCAC 37791 36 94.4 37 ..C.C............................... CGGAACTGGTTGATGGTGCCGATCTCCCCCGTGATGA 37718 36 100.0 38 .................................... AAGTCTGCGACTATGGTGATGACGATGAATGACCCGTT 37644 36 100.0 34 .................................... AGCCTCTTGATTGCGGCCTTGGGCTTCGTGTTGA 37574 36 100.0 34 .................................... TACGGCTTGCGCAGTCCCGTGGTTTCATTGCCCA 37504 36 88.9 38 ..C.CA..............A............... ACGACCTGGGAGGAAACGCCGTTGGCGTCGGAGGCCTC 37430 36 83.3 36 ..C.CA......A.....T............C.... TTGTCGTTGACGGTTGTTTTTGGTCGGCTTTTTGCG 37358 36 94.4 38 ..C.C............................... GTACTTACGTACTGGCTGGCCAGCTTGAGCATCAGCTT 37284 36 86.1 32 ..C.C......T...................G.A.. TCGAGCGTGTATTTGAACGGGGTGTTGAAGAT 37216 36 88.9 34 .GG.....T.............G............. TAGTCGGTTCCGCCGTTCTGGTCCTGCCAGACAT C [37211] 37145 36 86.1 36 .GC.C.............T............G.... TCAAGGGCGACGCCGTAGTGGTTGAGCGGATTGGGC 37073 36 86.1 0 ..C.C.............T............CT... | ========== ====== ====== ====== ==================================== ======================================== ================== 62 36 97.9 36 GTACTGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : TTCTCCGCGCTCTGCGCCAGGGTGCCTTCGTTGCACGCGCGCGCGGACCTGGGCGTCTTCACGCTGCGCGGTGAGCGCGCTGCGGAGGATGCGCTGCACCTGATGGGCTGTGGCTTGTTTCTGCCGCCACGGCCCGTGGCTCGGGGTGCCCCGCCTCGTGGGGAGCTCGCGAACGCCGCGTGAGCGGATTGTCGGCTGGGCAGGGGCCTTGCAGGACTCCGCCCGGCGGGGGGCGCGGGGGAGTTGTATGCTGGATGATATTCAAGCACCTCGCCGTGGCGGAGGCCCGCACCCCCGAAGTGGACGATTTCCCCTGTTGTTTCGTGGGGTTGAGGCTCTTTGATAGGTGAATAGGTGCATGATTGATGAAAAGCTGAGTGATCTCAGGTGGTTCGGATTCCTGGGTAGGGTCCGGGAGCCACAACCTGGGCGAAAGCGTGGGAGGTGCTTGAAAAGTGGGGTGGTAAGTTGGCGGAACTGTTGGGAGATTCAGACGGGCT # Right flank : ATCTGGAAGCTGGCCATGCGTGATGAAGACCTGGTCGGGTTCGCCGCTCGCTTCGCGGCCCTGCGTGGGCGGTAAGCCCGACGCCGTGGGTTCTTCGCCCGGTGGAAGCTGCGCGACTGACTTCCCCAGTGCGAGCACTGGAGGGACGTCCGCTGCTGGGCCGCTTCGGGTCTCTCCCTGTGCATGGCTCGGATCTCGATCGGCCACGTCTCAGTGCTTTCAAGTTTTTTCCGTGGCGACCGATGGCGCCGGGCCGTTCGTGACGTCTGTCTGAACAGCGCCGATTCGCTGAACGGAGACGCCATGGCTGAACCCTTGAAGAAGAAACTGCCGTCTGACCTCACCGCTCGCATCGAGGCGCTCCGCGATGCGCTGCTGACCGGGCTCGTCGAGCGAGACGTGCCGGTCCGGCTCGCGCTGCTCGCCGCGCTCGCGGGTGAGCACCTGCTGCTCATCGGGCCGCCCGGGACGGCGAAGAGCCTGGTCGCCAGGCGCCTGCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //