Array 1 52595-52906 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZE01000006.1 Prauserella marina strain CGMCC 4.5506, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 52595 30 100.0 32 .............................. GGAGTGCTACTACCGAGCACTCGACGGCAGTG 52657 30 100.0 31 .............................. GCAGCAACACGGCGAATCCGTCGTCGGTGGT 52718 30 100.0 31 .............................. CCCGGCGACCTCTTCAGCTCCGTACGAATAG 52779 30 96.7 7 .............................T CCTCGGG Deletion [52816] 52816 30 96.7 31 .............................T CGTCCGTCGAGCCATGTGGCAACTTCAGAGC 52877 30 70.0 0 ..............T......CCCTCGT.G | ========== ====== ====== ====== ============================== ================================ ================== 6 30 93.9 27 GTGCTCCCCGCGCACGCGGGGATGGTCCGC # Left flank : CCAAGCTCGCCGAACCGGTTGCCGACATCGAGCCGCTGAAGATCAGCGAAAGCGCGCCGGCCGAGGGTGACGTCGTGCGCCTCGTCGGCTGGGGCTCTTCGGACGCCACCGCCGACCTGAGCCACCGGCCCGACCGGATGCAGACCGGCCAGTTCACCGTCACCGGGTCCGACGATCAGATCGTGAACTTCACCGGCTATCTGCCGAAGCGCGACGTCAGCGCGTGTCCTTACGACTCGGGCGCCCCGTTCTTCGCCGAGTCGGAGGACGGCACCTACGAGCTCGTCGCGACCGAAATCGGCGGCCCCGACTGCCCGCACGCGGAGGAAGAGATCGCCGCGAGGTCCGACGTGCTCCACGACTGGATCAAGGAACACGTCCGGTTGCCGTGACGTATGCCAGCGTCGCCGAGGTGGACCTGCCTCGGCGACGCGGTCCCGTGCTTGCGCGGCCGCCCAAAATTTGGCACCTTTGGCGCGCGAACACCCAGGTCAAAAAGG # Right flank : GGGCCGGTCGGCCGCGGCGATCGAACCACGGCAAACCAGATCAGCCGCTACTCCCCGGAAGACCAACCGCAACTGAAACTGAGCACCTACAACGAGAAACGGCCCTCACATAAACACTGTGAGGGCCGTCTTTGCAGGTAGTAGACGTGGCCAGGGCCGGGGTCGAACCGGCGACCTTCCGCTTTTCAGGCGGACGCTCGTACCAACTGAGCTACCTGGCCGGACACGCCGGCAAGCAGCCGAACGTTTGAAGCGACCCTGACGGGACTCGAACCCGCGACCTTCGCCGTGACAGGGCGACGCGCTAACCAACTGCGCCACAGGGCCTTGCTTGTACTGCGTACTCCCAACGGGATTCGAACCCGCGTTGCCGCCTTGAAAGGGCGGAGTCCTAGGCCGCTGGACGATGGGAGCCCAGCCGGTTCGGCGAACCGAGCGACCGCGCCCTCCAGGTCCCCCTGGGAGCGACTGTAAGTCTATGACACACCCTCAACCACCCC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.52, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 215050-214655 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZE01000004.1 Prauserella marina strain CGMCC 4.5506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 215049 30 86.7 31 ..A.....G...................AG GCTCGGACTCGACATCCAGCACCCATGCCAC 214988 30 96.7 31 .............................A CTGAGACTCAATGTTGACGGGACCGGCCTGG 214927 30 96.7 31 ............................A. GTCACGACCGGAGCGGTGTCGCCGAGTTCGA 214866 30 96.7 30 .............................A TCAGCCAGCGGATGATCGACCCGATGGTCT C [214861] 214805 30 100.0 31 .............................. AGTGCCGCCAAACCGGGCGGGCGGACATGAT 214744 30 93.3 31 ............................GG TTCTGATGATGTCCTTGACAGCAAGGCACAG 214683 29 93.3 0 .....................-......G. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 94.8 31 GTGCTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : GACCTTGCCGCCGCCGTGGCCGCACTACAGACCGAGGTCGCGGATCTGCGCACGCATCTACAGCGGGTCGCCAAGGATGCCGCAGCCGCGCAAGTCCTCGCGCGTGGCGCCGACCGCGACGTCGCCGACCTCACCAGCGAACTGCGTGACTTCCGTACCCACAACACCAATCTGCACAACGCCACCCGCGAGGATCTGCGGGAGACCCGCCAAGAACTGCGGGAACTACGCGAATCGACCAACGCGGGGTTCATGGAGATGCGTGGCAAACTCGATGCGACCGCGGCAGGGCAGGCTCAGATCGCCGAGCTGCTGACCACACTGATCGAGCGCGGCGACCGGAACGACGCCGCCGACTGACGTAAGTGACAGCGTGACGGCGCCGCTTGTCGAATTGGCGCGGTGAACCCATCGATCGGTATGCGCTGAGCTATAGAATCCAGCTCGTACCGTGGCCAAAATTTCGAGTCTTTCGCCCGCAAACCCGCAGGTCAAAAAGG # Right flank : TCCGCCTCGGCCGCCAGGTCCTGGACGCGCCACTCCACCGATGCTCCCCAAGCGTGTGGACCGCCCATCAAACCGGGCAAGAAAGGCAAACCCGAAACCCGGACCAAAGCCCCCGAAAACGCCCCGCACAAAGTGAGCCGACAAGGGGACTCGAACCCCTGACCTGCTGTTTACAAGACAGCTGCTCTACCAACTGAGCTATGTCGGCCTGCTCCCACTGTCACGCCGTGGTCGCGCGACCACTATATCGGCAGCCCGCTTCACGACGGCACCTGGTCGCGCGACTTCACGGGCCGGTTCAAGACCGTTTCTAGCGCTAAATTGGTCATGCGGCTTCGTGATCGGAAAACGTGGCAAACGCCACTCCGGTAAGGGTGCAACAGCGAGAGCACGTCGGTCGATGCTCCCCGGGAAACCTGCGAAGGAGGTGGGAAATGAAACTCAGGCCGCGCGCGAGAACGGCGCCGAACCGCCGGCACGCGTGGCAGATCCTGGAGGCA # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72584-72917 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZE01000013.1 Prauserella marina strain CGMCC 4.5506, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72584 29 100.0 32 ............................. TGGTCCTGAAGCTGGTCCCCGAGCTGGCCCCG 72645 29 100.0 32 ............................. GCCCGACCCAACGCAGACGGTCGGACGGAACC 72706 29 96.6 32 ............................G TCGTGGCGCGAGTGTCGGACCTGGAGGCCCTG 72767 29 100.0 32 ............................. TTCATCCGGAGGGGGAAGTCATGAGCAGGCAC 72828 29 96.6 32 ............................T TACTGAGCGCACCAGCCTGGTCAACCGTGCCT 72889 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTCTTCCCCGCACGCGCGGGGGTGGTCCC # Left flank : CGCGGACGTGCCGTACTCCATGTCGTCTGGGTGCGCCACGACGCAGAGCACGCGCTGGAAAGACTCCTCGGGAAGAGCAGACAGTGGCATAACGACCATCCTTCCGCCTTTCAGGTCCGAAGCTCACACCTCTGACCTGCCGATTGCCGCAGCCGACAACGACCGGCAGCGAGCCCCATCAGAGTGCGGCACGCTCACGAATAGGAGAAGCAGCGACTGGCCATGCACGCGCTCTTGCTCGAAAATACCTGCGAAACCGGAACCGATCCGGGACGAAACGTGAACACGACACCCCGCCCGGTTCGGCGGCCACGCACAAGCTGCCGAGTCGGCGACGAATTACCGAGCCTCGGCGGGCGACCGACGCGTGGAGACCGTGCGCGTTGCGAGCTACCGTTTCGACGTCCGGAAGGCGGGACCGCCAGGACCCGGCTGACAACCAGGCGGGCCCGAGCCAAACTTTTTCGATCCAGACTCGATATACTCGCAGGTCAAGAAGT # Right flank : CCCGGCCGCCGCCGCACCGTCGATGCAAGTCCCCTGCGCATCTCGCGCCGACCGAGATCGGTCAACCCTCGGTGAGCTTGGGATGTCCCACGCTCGCAGCCTCAAGCCACACGGTCCGCGCTTCGGCATCGATCAGATACCAGACGCGACCCGCTCCGGTGACTTCGATCTGCCACCGGGGCAGGTCGTCCTTGGCCTGAACTGAACCTGTCGCGAGTCCGCCTTTGAGCTGGTGGTGCCGATTGCTGACGCCCTGGCCGGGACGAGTGCGCAGGATGTCCCACGCCGTACGCAGGTTGTTCCCAGCCGTGTTGGTCAGCTTTTGCCAGCCCTTGATGGCTTCGGTTTTGGCATAGCGGATCTTCCACTCGTCGCTGACCGTAGGCGGCGCGACGTCATCACCGCGTTTTGGGCTCATGCGGTCGTGGAATCAGGGGCGGCGACCTCGCCGAGGTCGTCCCCTCGCTTCTTCAAGACCGCCAGTACCTCGGGGTCGGCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACGCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 372394-371505 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZE01000001.1 Prauserella marina strain CGMCC 4.5506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 372393 29 96.6 32 ............................C CACGACCATCAACACCGCTGTGTTGATCCAGC 372332 29 100.0 32 ............................. GGATCACGGTGTCGCGCGATCATCAACCCATA 372271 29 96.6 32 ............................C TCGGAGACGACCTTGAGGACGGCCATCTTCAT 372210 29 96.6 32 ............................T CGCTGCCGCGACGGAGGCTAGTCAGTGCCGGG 372149 29 100.0 33 ............................. CCGCATGCCGTGCAGCACAGCCAGAAAAGCCCC 372087 29 100.0 32 ............................. TACTTCGGGTTGGACCCTCTTGCGATCTACCT 372026 29 100.0 32 ............................. GTCACAATCCCGGCATGGAGTTTGCTACCCGG 371965 29 96.6 32 ............................C GCGTCACGCCGCGACCTCACGCACATCCAACC 371904 29 96.6 32 ............................C TCCGGAGTCGCCTTACGCGGCAACTTGATATC 371843 29 100.0 32 ............................. CCTCCTGTTCGGCGGCTACTCCGAAGGACAGG 371782 29 96.6 32 ............................A GGTCGATCCTGACGGCGTACTTCCGCCGGATG 371721 29 100.0 32 ............................. AAGCGCTCGGCCTGCGCCGGGTCCTTCTCCAG 371660 29 79.3 31 ..............T........TCCGG. CGTAGAACGCGTCGAGATCACCATGGACGGT 371600 28 89.7 37 ............T........-......C GCCCGGAGCACCCGGGTCAACGGTGCATCCGTGTGGC G,C [371574,371592] 371533 29 72.4 0 ................T...ACCAGG..A | ========== ====== ====== ====== ============================= ===================================== ================== 15 29 94.7 32 GTCTTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : TCATCGTCGTCGCCGCGTGTCCCACCGGCCTGCGTGGGCACCTCACGCGGTGGCTGCTGGAAATTTCGCCCGGTGTCTTTGTCGGCACGATCAACGCGCGGGTCCGTGAACTCGTGTGGGTCCGCGTCGTCGACATGGTCAAGAGCGGACGCGCGATCATGGTGTATTCCGCCAACAACGAGCAAGGTCTCGCCTTTTCCGTCCACCACCATAATTGGGAACCAGTGGATTTCGAGGGCGTCAACCTCATGCTCCGGCCCAACACCACGTCCGATGTGGACCAGAGTCCGGCCCCACGTCCGACCGGCTGGAGCACCGCCGCCCGGCGCCGGAAATTCGGGCGTTGACTCGGCTGGGACCGTTGCCCGGCAGGGATGGCCCGAGCAGGAGGGGCGATGTCGTCTGGGCACGGTCGCATTGACGTCGGCCATACCCCAAGGAAGATCAACTCAGTCACACATAATCGATTCAGGGCGAGGTAAAGTCGCTGGTCAGGAAGT # Right flank : CCACGGCCTGACTCCGCGAGTCCCGCGCTCGTGCTCGCGAGTCCCCCGTTCAGGCCCCCGAGATCCGCACTCAGGTCGGCGAGATCCGCACTCGGCCCAGCGAGATCCGCAGTCACCGCACCACAGCCACGTGGAGGCGTTCCAAGGCGACCCGGGTGTGGTCTGAACACATCGCACGCGTTGCCAGCCAGCGCGTCTTCCCTGCGGGTGGCGCAGCCCAGCACCTCACCAAGACTCGCTACAGCGCACGTCTCAGCCTGGGAAACCCTCCCAGTACACCCGGTCCACTTCGGACAATCCTGCCAGGAGCCGGCCTAGCGATACGGCGGCCGCGCGACGGCATCCTGAGCCTCGGCCTGCTTCCGATGTCGTTTGCGAACCACCAGCGCGATCACGAGCAGCCGCAAGGGAATAATCACCCCGATCTTGTAGTGACCCTGGAACATGACCCGATACCGGCACCGCCCAACACAAACGGGAGAAACGCCAGACGACTACCC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 382475-381775 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZE01000001.1 Prauserella marina strain CGMCC 4.5506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 382474 30 100.0 31 .............................. GGAGCAAGGCGAGCCGGTCGGCCCCAGGATC 382413 30 96.7 31 .............................C ACATAGGACGCGCGGTAGTGGTTCGGGACAC 382352 30 96.7 31 ............................G. ACTCCCAGTACACGAGCACCTTCGGCAGCGG 382291 30 96.7 31 ............................G. CTCTACGACCGACCGGACACCATCGACGATC 382230 30 96.7 31 .............................C ACAGGAACAGCAGTTTCTGTTGGGTTTCGTA 382169 30 100.0 31 .............................. GGTTCTTCCAGGTGTTGATTCCCTTGATGTA 382108 30 100.0 31 .............................. CGGCCATGAGCCCGCGCACGTATTCGCGGTC 382047 30 96.7 31 .............................G TTGCCGAGATCAACGCGCCGGTGCCCTCCGA 381986 29 90.0 31 .................-..........GC GCCCTCAGTCCGACGCCGCGCCACCGCTCCA 381926 30 93.3 32 ............................TG GCAGCACGGGTCCCGCCGTTACGGCAATTTGA 381864 30 96.7 31 ............................G. TGAAGTACTTCGCCTGGTCGACGACGAGCAG 381803 29 80.0 0 .........A...C.......C-.....GG | ========== ====== ====== ====== ============================== ================================ ================== 12 30 95.3 31 GTCTTCCCCGCACACGCGGGGGTGGTCCCT # Left flank : GAACGCCTCGTCCGGCTCGGCGTCGTCGACATCGAACTCGGCGTAGTCGCCGTCGGGACGCATCCCCCAATAGGTGTCAAGCTGCTCGCCGTTCATGACCTTCTCGAACCAACCCCGCTCGATCTCGGCCATGTGCCGCACGAGGCCGATCAGCGACATATCGGACGGCGGGACGGTCTTACGCCTCAGTTGTTCCGCGTTCAGCCCCGCGCACTTGACGGCAAGGGTCTGGCGCTGGAAATCCAGGAAACCCGTCAGGGAAGCGCGTTCGTCACCCTCACGGGGCGGATGAGTTCTCGGATCCTCGTTCATGGCCGAATCCTGGCCTATCCAGATGGGGAAGGCGACCGGGTTGTTCGTTCACGGGTGTAATTCGCTCGCGAGGAGCCCGGTTCCGGGCAACGTGGTGCGACCGATGCACCAGGCAGCCAAGTCGACGAGGTGTTGTCTCTTCCCAAAATTAATCGATTCAGGCTCTGTATACTCGCAGGTCAAGAAGT # Right flank : GTTCAAGTCCCGTTACTCACCCACGTTCTGTCTTCCTCGCGCGCCCGCGCCGCCTCCATCACCTCCAGCGCTGTAAGCATCTCTCCCCAAGGCCCGGCCGACCGCAATTTCCCTACCCAATCACCCTTAGAAATAAACCAGCACGCTCCCGAAATTCGTTATCATCCGACAGCACTACTGCGACACCACAAGAAATCACCGGATACGCCTCGGACTGGTCAGAAATGACTACATCACGCTTTGGTCACCACGGAAGAACCGAGTAACACCTGTTCCTTCTGGTGAGATATACCCGCATCAGATCCCGAAAACCGAATTGCTCGACACCATCCACTGAGGGACGCATGTCGAACGGTATTGCCTGGTTGTCGCCCTGGGGGAAGACAACGCGCGACCAGAACGGAATTGTCGAACGATGGTTGCCGCTGATACAGCACCTGGAAGACAGTGCCGGCGTAGCTCGCCTCATCGTCGACGAATGGCTTCCTCATCAGACGAGG # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 862791-862088 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZE01000001.1 Prauserella marina strain CGMCC 4.5506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 862790 29 93.1 32 ...........................GT CCGATACGACGGCGGTACACCGGTCATCGGGT 862729 29 96.6 32 ............................G AAGGCTGTGAGGTCGCATCGGCGGATGTGGGA 862668 29 96.6 32 ............................G CTGGAGGACCGGTGAGCACCGAGAGAGACACC 862607 29 100.0 32 ............................. CGGCGGTACCGGTGTGGTGCTGGTGTCCGGCA 862546 29 100.0 32 ............................. TGGAATGACTATGATGCGAGGTTCAAACGCGG 862485 29 100.0 32 ............................. GTTGATCGTCGCCTCATCGACCGTCAGCCAGC 862424 29 96.6 33 ............................G GTCAGGTCGGTGGTCTACCACCGAACCGGGGCT 862362 29 100.0 32 ............................. GTCCGGGTCAGCTCGGCCCTTCCTTGCCCCGT G [862345] 862300 29 96.6 32 ............................G GTGCTCGCGAAGCTTGTTCACCTGATCATTAG 862239 29 100.0 33 ............................. CGCTCGCGCCGAGCTGGCCGACATCCGACGAGC 862177 29 93.1 32 ...................A...C..... CACAGCAACCACACCGGCCACGGCGTATCTCG 862116 29 72.4 0 ...C.......ATA.......A.A.C..G | ========== ====== ====== ====== ============================= ================================= ================== 12 29 95.4 32 GTCTTCCCCGCGCGAGCGGGGGTGTTCCC # Left flank : GCGGAACGCCTCGACGAGCGCGTCGGCGCCGGATGCGGTGAAGGCAACCAGCGCGTGCTCCTTGCTGGGGAAGTAGTTGAAGAACGTCCTCAGCGCGATGTCGGCCTCGGCGGCGATCTGCTCGACCGTGACGTTCTCGACGCCGAATCGCACCGCGAGCCGCACGGCGGCTTCCTGCACCGCGGCGCGGGTGGCCAGCTTCTTGCGTTCGCGCCGCCCGAGCGCCTGTTCCCTCTGGCCGCCGCTACTCTCCGACGTGCGCGAAACCATGGTGTTCTCCTCGATCCGGCACCCGGCCCGTGCGGGCGCGTGGCGCCGCGACCCGACAATAGGCCCGGCGTCCGCATGTGGCAGCGGCGGCCGGGCAGCGCTGGTGCCAGTGGGTCGTGGTGGTTCGTCTTTCTTTCGGCTTCGGCTGCTGGCTGTTTCTGTCCTCGCAAGATCAATTCAGTCACGCATTATCGATTCAGGGTGGGGTAAAGTTGCTGGTCAGGAAGTGT # Right flank : ATCTCGTCGTCCGCCAACCGCGCGGCCACAAGGAGTCAGCCGATCCAGTAGCGGCGCTTGCCCGGCCTGCCCGGCCCGGCGGGCAGCGTGTTTTCCCATCGCCCGCCGTTGGCTTCGATGACGGTCGCCGAAGCCGCGTTGTCCTCATCACACGTCACGAGAATCCGGTCCACCCCCAGCGATCTGGCGACAATCACGCTCTGGCGCAGGATCTCGGTCGCGTATCCGCGCCGCCGGTAGGGCGGCAGCACCGCGTAGCCGATGTGCCCGCCCACCCGGAGCAGCGCATCGTCGAGCGTGTGCCGCACCGAAGTCCTGCCCACGATCCGGCCGCCGACCTCGGCGACGAGCAGAGTCGCGGGCACCGTCCCCTCCTTGCGCCCTCGCTCGTCCCGCTGATCGGCCAGCAGCCGCAGATAAGCGGACCACTCCAGTTCTTCCCGTAGCCCCCATCCGAACTCGAATCCCTCGTCGAGCATCGCCCTGTGCGCCGCCCTGAA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //