Array 1 118959-117909 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEEM01000013.1 Enterobacter cloacae strain ECC2288 ECC2288_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 118958 28 100.0 32 ............................ ATTTTCACGCATCAGGGAATCACACTGCGTCG 118898 28 100.0 32 ............................ AGGCCGAAGACGGACACGGCGACTATATGTCC 118838 28 100.0 32 ............................ TGGCTTACTCGTCGATGGCCGCGCAGTGCCAT 118778 28 100.0 32 ............................ GACGTAGACCTGCTCTCTGACGTGCAGCAGCT 118718 28 100.0 32 ............................ GCCCGAACGCGGGCACCAGCGTCGCCAGCACG 118658 28 100.0 32 ............................ CTGCTGAGGCATTCACCTGGCATCCAGTTTCC 118598 28 100.0 32 ............................ TGATCGTCAGTGTCAAAAAACACACTTAAATC 118538 28 100.0 33 ............................ CTGCCTGTCCTGGACTTCTTTACCAGCAATCAC 118477 28 100.0 32 ............................ TGGATGACATCACGCTTAGCGATGCCATCAAC 118417 28 100.0 32 ............................ GTCGCGCTGTGTGGCTTTTCAGATGAGTCACT 118357 28 100.0 32 ............................ TGCCCGGTAACACCTGTTTGGCCACCGTTCCA 118297 28 100.0 32 ............................ TTATTCCTCACCGCATGATGCTCATGTGCAAT 118237 28 100.0 32 ............................ GCTCAACGCTGCCTGTAAAGCGTTGTGAGCGT 118177 28 100.0 32 ............................ GGCAAGCATGAGTTGCTCCTGCGTGGCGGTAT 118117 28 100.0 32 ............................ TGCAACCGTTCTTCTGTCGTAAATGACACGTT 118057 28 100.0 33 ............................ TGGGCGGGCACGCTGAGCGATTATCAAGAATAT 117996 28 100.0 32 ............................ AACTGCCAAATGCAGCGAACAGGGCGAATAAA 117936 28 78.6 0 ...........C....A....AC.A.C. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCACAAACGCAGCCCGTATGCCGCTGTCTCGGAGCCTATTTGGAAGAAGTGAAAACCGGCCTCACAGAATCAATGCGTGATTTTCAGGTAGTGGAGTTTGAGGACGACGCGGAGCAACCGCGACAAAAAGAGTGGTTGCTGGAGGATACCGAAACGAAATGCGACTACTGCCGGGCATTAAACCATGTGTTGCTGGTGTCGCATGTTGACCGCGATATGTTGCCGCACCTGACGGGGCTGCTGCATGACATTACGCATTCAATGGCGGCAGATGTCTTTGCACCTCAACATTCAGAAAAGATAATGCACATTATTTCCTGAGTGCGCTCTGAGGCATCGGGGAAGATCCACTGATGCCAATGGTTTAACCCTTTTTTTTGATGTGCACGTAATTCATTGATTTATATGGTTCGGATTTACGTTTCAGAAAAAAGGGTTTTATGTGCAAAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTTGTTTCCTTTCA # Right flank : AGTCCCCATCACCAATATTCACCCTATCTATTTAAACATTAAATAGCATCACACGTGTACCCTCTATTTCAGATTAAATAAAAAAACATATTCACGCACAAATTATATTTCTGCTAATATATTATTCGTAAAAATGATGTGCCAAATTGAAAAGTGATTTTTCGCTTAATTATTACTGCAATTACTATTCGTTTGATATCCATCACATTTGCTTGTAGCTTATTTTCGATAACATACCACACATTCCACACCTTGAAATAAAAGCCCTCGCCATGCCCGTCAACAGCATTACTTCAACAGATTTAAAAACTATTCTCCATTCTAAGCGCGCCAATATCTATTACCTGGAAAAATGTCGTATTCAGGTGAATGGTGGGCGCGTTGAATATGTCACTCAGGAAGGCAAAGAATCGTTTTACTGGAATATTCCCATCGCCAATACCACGGCAGTGATGCTGGGTATGGGAACATCCGTTACGCAAATGGCAATGCGGGAGTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 177705-176955 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEEM01000013.1 Enterobacter cloacae strain ECC2288 ECC2288_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 177704 28 100.0 32 ............................ CGCCAGACTGCGCAGCTGTGCCGCCCGTTGCA 177644 28 100.0 32 ............................ CCACACATAGAAACCTCCAGCCAGATGTCAGA 177584 28 100.0 33 ............................ TCATGGGTAAGAGATGAAATGGGCATCTCATCG 177523 28 100.0 32 ............................ TGGCCGATGAATCCGATCGCGATATCGCATAC 177463 28 100.0 33 ............................ AGTAGTCCACAGCGCCGCCATCGCCGCAAAAAT 177402 28 100.0 32 ............................ AGGCCAACATTGCAAGCCACGTCCCCAACATC 177342 28 100.0 32 ............................ ACTCACTCGGGATGTCTGATGGGCGCAAGGCT 177282 28 100.0 32 ............................ TGTTGCTCCAGTTCGTCGTTGGCCTGTTTGAT 177222 28 100.0 32 ............................ ATACCGCCAGGCGGGTTTTGCCGTCGAGCGTT 177162 28 100.0 32 ............................ CAAAGCCAGCAGCGTAATTAAGTCAATCACCC 177102 28 100.0 32 ............................ AGGAAAGCGTCGGTAGCCGGGGTTTTGATCGC 177042 28 96.4 32 ...........C................ CATTCAAACCAACCGTCTGCAAAGCAGATTGC 176982 28 92.9 0 ..............T.........A... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTGAGAAGAGTCGAAGTGTGTGATAGCGGCTTTAGGGGCGGCGAGATAAGTATTCACGACAGGGTTCATGGTGTATCTCCACGGGGTAACCTGCATAACGGACGTTGCCCAGCGTCAGGCGACGTCCTGCCCGGAACACAATTTTACTGTATATGCATACAGTGTTTTGAGTTCGTTCAGAAAGTATAATCAGATCGCCCGGCTTCGCCAGAGAAAATGAAAAATTTTTAATGTATTGATTTTTATATATTTATTTTTAAGTTGTCTGCGTAACAGGTTGAGGTGGGGAGCCCGGACTTCATCGTAAAGATCATTTGTGAAGAAATACGCAAGGGGTATTGAAAGGTCTGTCCTGACGAACTGCGTCAAAACCCTTTTTAGGGAAGGCCTTGTAAGTTGTTGATTTATTAAGGATGAACTGAATGAGTTGAAAAAAGGGTTAAAGGCATCAGAATTGATTATTTTCTTTTATGACAATACGATAGCGATGTTTGCTTTCA # Right flank : GAATTAACCGACAGTTCCGGGAGCAGAGACATTTTTACTGCCGTTCAGGGAGATTTACAGCCACCTGGCCGTCAAGAATGCCGGGTGGCGCTGCGCTTACCCGGCCTACAATCGGCATTAATATCAAGGAATTGCATTATTTATCGTAGGGCAAAACGCAAGACGCGCGCTGGATTAACAGGCTAATCCATGCATCATATGGTTCAATTCTATTGAATGAAGTAAAAAAGCAATGACTGGCAAATAGATAAAACCCCACGTCAGGGCGCGGGGTTTGCTTAGTGATTACTGAGCGGCAAACAGACCCAGATGTTCTTTAGCGTAAGCTTCAAAATCGGTGCAGCCGCCAATGTGTTTCTGATCGAGGAAGATCTGCGGTACGGTTTCAACCGGTTTACCCACGGTTTTTTCCAGATCGGCTTTGGTGATGCCTTCTGCGTGGATATCCACATAGCGGAAGTTAAAGTCATCACGCTCTTCAGTCAGTTTTTCAGCCAGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //