Array 1 5027-4460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWZ010000008.1 Bacillus pumilus strain 179-K 3C2 HS NODE_8_length_156261_cov_354.673372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 5026 32 100.0 38 ................................ TAGTTGTTCAGCGAAAAAGCTTACGTTATCGCTTAAAC 4956 32 100.0 34 ................................ TTTGGTGACTTAACGCCTAACGCACCTGCAACAA 4890 32 100.0 35 ................................ TCATCCTGTTTTGTAATGGTTTCAATAACTCCAAG 4823 32 100.0 36 ................................ TCCCGATTTCAATTCTGCTACCTTTTGAGCGATCTT 4755 32 100.0 35 ................................ CTCTTTTTCCGGATCAAATTTTGCAATATAAAGAC 4688 32 96.9 34 ...........T.................... AACAAAACCAGTTACATTTTCCACTCCAATATCA 4622 32 100.0 33 ................................ TAGACAATATGGCAAATAGCAACTTGTTTTATG 4557 32 100.0 34 ................................ CCTTCAACTTTTGCTTTAATATCAACTTCTACAG 4491 32 81.2 0 ....................A.A...CAC.G. | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 97.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAGTGCGTGGATTGAAATCCACACGTTTAGTCGATAGTTATTTGACGTACAGTCGCACTCTACATGAGTGCGTGGATTGAAATTACAAACATAATAGCCAATTGTTCTAGATACTGGTCGCACTTTACATGCGTGCGTGGATTGAAATATTGATTCTCTATGTTCTGGTATTTCAATGGCGTCGCACTTTACATGAGTGTGTAGATTAATAATTGCGAAATACATAACTCTGCCTCTCAGTAGTCATGTATTTATTCAGTTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAGATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : GTCTTTGTTTTATACAAATTCAACTACCTATCCAGTTCAAAATCTACACAAAATGAATAATCAATAATGTACTTCCCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCAGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACGAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAAGCTGAAATGTTTTCGTCTTGTTTGGCAATTTTCATAATTTCTGTGTCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAGGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATCGTAGG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5671-5312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWZ010000008.1 Bacillus pumilus strain 179-K 3C2 HS NODE_8_length_156261_cov_354.673372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5670 32 96.9 35 ...........T.................... GTTGTGTATTTTTCGTTTGCTGTACGGTCAAATGC 5603 32 96.9 33 ...........T.................... TGTTTCCATCCACTCAATCGCATACTCTAAGTC 5538 32 100.0 33 ................................ CCACACGTTTAGTCGATAGTTATTTGACGTACA 5473 32 100.0 33 ................................ TACAAACATAATAGCCAATTGTTCTAGATACTG 5408 32 93.8 32 ........T......C................ ATTGATTCTCTATGTTCTGGTATTTCAATGGC 5344 32 87.5 0 ........T..........T..A....A.... | T [5315] ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.9 33 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCCTGAGACAGTAAAGGAAGCATTCAAAGTAGATGTGATGACACCACATCATTCAGACTATAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCGCCTCGAGACGATGACTCACCAACACCGATTCTTTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAGAACAAAAAAGAATCTACCAGAAGAAGTGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGCGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCATGAAACTTGGTGCGAATGTGAGGTGAACATAAAATCTCTGGAACATTCGCACAGTTTCATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGGGAAAATAAAATTCTATATAGAAACTTGAGGGTTTTGACGATTATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TGCGAAATACATAACTCTGCCTCTCAGTAGTCATGTATTTATTCAGTTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAGATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTAGTTGTTCAGCGAAAAAGCTTACGTTATCGCTTAAACGTCGCACTCTACATGAGTGCGTGGATTGAAATTTTGGTGACTTAACGCCTAACGCACCTGCAACAAGTCGCACTCTACATGAGTGCGTGGATTGAAATTCATCCTGTTTTGTAATGGTTTCAATAACTCCAAGGTCGCACTCTAC # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 13538-13304 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWZ010000008.1 Bacillus pumilus strain 179-K 3C2 HS NODE_8_length_156261_cov_354.673372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 13537 32 100.0 34 ................................ AAGGGTTTGGGGGCGCTGATTGTTTCAACTCCTT 13471 32 100.0 34 ................................ TACACTTCGAGAGTGTCGTTTTTATTCGCTTTGT 13405 32 96.9 34 ......C......................... ATGCAGTGACCTCCTGAATGTATGATGAATTGTT 13339 32 81.2 0 ......CC...T............T..TC... | AC,G,A [13315,13321,13330] ========== ====== ====== ====== ================================ ================================== ================== 4 32 94.5 34 GTCGCATTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCACTGAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACGAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTAGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACCGGCTGATTTATCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGCTGTAAGAGAAGCTGATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTCATGAAGGAGAAAACAAAATCCTATATTGAAATTTGTGGATTTTTACAATCATTCCCTAAAAAATGTTACAATTAGGTCGGAAATCGCA # Right flank : GATTGTGTCTTAAACGGTTATGACTACCTTAAAGATCATCTTCTTACAACACCCTCTTTCAGATACAAAAGCCATCAGAATATACTGTTCATTTGTATAGTGAAAACATGACTCATTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGGCTGACAGGAGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATG # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //