Array 1 2836101-2838508 **** Predicted by CRISPRDetect 2.4 *** >NC_009457.1 Vibrio cholerae O395 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2836101 28 100.0 33 ............................ CAAATGGCTCAATGCGCGATTGACTACGTTACT 2836162 28 100.0 33 ............................ CAATCAACGCACTAGACAACGCCCAAATGAACC 2836223 28 100.0 33 ............................ CAACGCTATGCCCGCTAAAATCAGTAAACAAGA 2836284 28 100.0 33 ............................ TATATTTCGCTCCCGTCTCGTCAACTAAAATCA 2836345 28 100.0 33 ............................ CTTCAAATAAGTAACCAGCCTCTGACGCTGTTA 2836406 28 100.0 33 ............................ CACCGCTAATCATGGTGGAACGAACGCCATCAA 2836467 28 100.0 33 ............................ TGATTTTGGAAGTAATGGGAACTGAGCGTTAAG 2836528 28 100.0 33 ............................ CCAAAAACCTACGCGGTTTTAAATGGATTCGAC 2836589 28 100.0 33 ............................ TATCTTGGTTTTGCAGGTTGTTAATCTCAGCGT 2836650 28 100.0 33 ............................ TGATTGGTTCCAGTTTATGACAAGAACCAACAC 2836711 28 100.0 33 ............................ TACATTGGCAAGACGTTTGTTTTTCGCTGTGTA 2836772 28 100.0 33 ............................ CGACTTTTGCATCATCGATGTACGGAACGCTAG 2836833 28 100.0 33 ............................ CACTGAGATTGCGTGTCGCCGACTTGCGCTTGC 2836894 28 100.0 33 ............................ TAGACTATCAATGTGCGCTTGCAAGTCTTTTAA 2836955 28 100.0 33 ............................ TTGATCGCTCTGAAATTGTGACTTGTTTTGTTA 2837016 28 100.0 33 ............................ TAGATCTTAATTGTTCGCGTTGAATGGGAAATT 2837077 28 100.0 33 ............................ CAGATTGTAGATAAGCAGGAGACTGCCCACCAG 2837138 28 100.0 33 ............................ CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG 2837199 28 100.0 33 ............................ TAAAACTTCATAGATTGTTGCCTCCATTGTTTC 2837260 28 100.0 33 ............................ TACGTCAACGGACAAACCAAAACCGAATGGAAG 2837321 28 100.0 33 ............................ TAAGTAACGCTGCTACTGCCCTGAGCTAGTACC 2837382 28 100.0 33 ............................ TACTGGCCGATGAGGTGGACCGCTACGGCTTCA 2837443 28 100.0 33 ............................ TCACCCAGCACATTACCACCCATGATCAGCGTT 2837504 28 100.0 33 ............................ CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC 2837565 28 100.0 33 ............................ TTCGAAAAGCTATTAGGCGGCATAACCACAGTT 2837626 28 100.0 33 ............................ CAACAAACCAGCCACTTTGCATTTTGTAGCAGA 2837687 28 100.0 33 ............................ TGGAAGTTATTTATATTGGACCTGATTGCACGG 2837748 28 100.0 33 ............................ TACTTTGGGCCTTGTTTTATGTGCCAGTGCCCG 2837809 28 100.0 33 ............................ CCACTATTTCAATAATCGGCGTAGCTCCGACTG 2837870 28 100.0 33 ............................ CGTAATCTTCTTTGTCTGAGTAATCCAAAATAC 2837931 28 100.0 33 ............................ TCATGGCAGCGATATTTGTTTTACCCTTCATAC 2837992 28 100.0 33 ............................ CATCTGGAACGCACTCAAGCGGCAATCCGAAGT 2838053 28 100.0 33 ............................ CAGCAATGTGTTATCCAATGCGAAAGCGCCGTT 2838114 28 100.0 33 ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 2838175 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 2838236 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 2838297 28 100.0 33 ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 2838358 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 2838419 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [2838440] 2838481 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.3 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //