Array 1 1404227-1405516 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP065605.1 Listeria welshimeri strain FDAARGOS_947 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
   1404227	    36	 100.0	    31	....................................	CTAATTTTGTAAATCCGTTCTTCATGGTCAA	
   1404294	    36	 100.0	    30	....................................	CTTACAAATTCCAAGCCTTACAAGTGAACT 	
   1404360	    36	 100.0	    30	....................................	TTAATATTAGTATTTTTCACAGGCGTGGCT 	
   1404426	    36	 100.0	    30	....................................	GGAAAAACTGCTTCAATTGATCGTCATACT 	
   1404492	    36	 100.0	    30	....................................	ATGTAAAAACTTTTGACGGTCAAAGAATGG 	
   1404558	    36	 100.0	    30	....................................	TCTTTTTTAAACCAATGATAAGGACTGTCA 	
   1404624	    36	 100.0	    30	....................................	TAATGCTAAAACAGTAAAAACCGCATTCCA 	
   1404690	    36	 100.0	    30	....................................	ATTAACAGAAGCGGAAATTAAAGGTATGCC 	
   1404756	    36	 100.0	    30	....................................	CTATGTCCTTTCCATTACAAATTGTTTCTC 	
   1404822	    36	 100.0	    30	....................................	AAATACAATCATCAAAAACAAAAATAAATT 	
   1404888	    36	 100.0	    30	....................................	TTACAGTAAATCTTTCATTGAAAATCACGT 	
   1404954	    36	 100.0	    30	....................................	AACTTATTTTTATGCCGAGTTACGGAGTAG 	
   1405020	    36	  97.2	    30	............A.......................	CCTACTAATCCTTCATCGATATAAAAATGC 	
   1405086	    36	 100.0	    30	....................................	AATAGTTGCTGAAAATAAGAAAGATCCTCG 	
   1405152	    36	 100.0	    30	....................................	AAACGTCAAAGGGTTATTATCGCACAACAA 	
   1405218	    36	  97.2	    30	..................................G.	AATTGATTCTCAAGATAATACATCGATATA 	
   1405284	    36	 100.0	    30	....................................	TTTTCATTTTCTCAATTAAAGATAGTGCCG 	
   1405350	    36	  97.2	    30	...............A....................	TCTTAGAACAGAGCCATGGGACTCACTAAT 	
   1405416	    36	  97.2	    30	...............A....................	GGTTTATATTTGGTATAGTGAAAAATAAAA 	
   1405482	    35	  88.9	     0	..............C..........A....-...C.	|                              	
==========	======	======	======	====================================	===============================	==================
        20	    36	  98.9	    30	GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC	                               	       

# Left flank :   TGATAAGCTGACCGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGGATAGAAAAATTCTACGAG
# Right flank :  CCATCTCTCAATCCACTCCAGCTAGAAAAGTTACACCATTATGAAAGAGAGGCTCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACCACTACATTCGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTACCTACTCCAAACATTTTAACCCAACTTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTACCTTTGACGAATAAAACAGAATTAGCCATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.30,-0.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//