Array 1 167699-170194 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNGS01000008.1 Vibrio parahaemolyticus strain F1_4 F1_4_contig008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 167699 28 100.0 32 ............................ TCACAGTAGATGATGAAACAGCGTTAGATCCA 167759 28 100.0 32 ............................ AAGCGAGAAAGACACAGATGCAGCGGAGCAAA 167819 28 100.0 32 ............................ CCACAAACCCGTCGGCAGTCCTGGCACTGTTA 167879 28 100.0 32 ............................ AGCCGTTGACGTTTTGACCGCTTCAATGTCAA 167939 28 100.0 33 ............................ GAATACGGAAACCGGCAAAGCCTATGCACCTCT 168000 28 100.0 33 ............................ GGACTAATGATTAAGGTTCGCCCGGACATTGAA 168061 28 100.0 32 ............................ AAGCTAATAGAATGCGCTCAAAACGCCCTGTA 168121 28 100.0 33 ............................ GAGTTCAGGGTTTAATGAGGGATGGAGTACTAT 168182 28 100.0 32 ............................ GCAGCGGCGTTTTGCTTCCACTGGTTGCGCAA 168242 28 100.0 32 ............................ GCAATGAAGCGTTGAGATTTGCCTTGCAAGTA 168302 28 100.0 32 ............................ TATCGCCTCATCCATGTCCGCAGCGGCGTTTT 168362 28 100.0 32 ............................ AGAGTCCCCAGTAATCGCAACCGGATACCCTT 168422 28 100.0 32 ............................ GCCAACTATTGGCGAGAGCAAGACAACTGGGT 168482 28 100.0 32 ............................ ATTCACGAATATCGCCCATTTGGGCTATGTCC 168542 28 100.0 33 ............................ TTCGATAAAGGCAGTTTGGGAATAATTGTTTTT 168603 28 100.0 32 ............................ CTAAAGTGTTATTGCGTGCAAGCTTTGTTACA 168663 28 100.0 33 ............................ ACAAGGTAACTTGGCGGCTATGGCGACCGTTGC 168724 28 100.0 32 ............................ AGACTGGTCTTGAATTAGCGCATCCAAATTGA 168784 28 100.0 32 ............................ AACTCGACCTTACCGACACTGCTTTCCTGCGG 168844 28 100.0 33 ............................ GTAAAAATGGCGCAACTATCCTAACAATATTCA 168905 28 100.0 32 ............................ TTATCAGTATGTTGCGGTTGGTCTTCCTACTG 168965 28 100.0 32 ............................ AGCCGCTGCCGCTGCCACCGCCTGTACAATAG 169025 28 100.0 32 ............................ CACGAAAGATTTCGAGTGGGAATTAAATAATC 169085 28 100.0 32 ............................ TGCCGCGCCTGTTTCCTCGTAACTAGCGCCAG 169145 28 100.0 33 ............................ TTTAGAAAGCGCGCGCGGCACTTGTCCAAATTT 169206 28 100.0 32 ............................ CATCCACTTGTCAGCAGTAACCGCGCTTCCAC 169266 28 100.0 32 ............................ AATTTGAAACCGCATCATTAACTTGCGTCGAT 169326 28 100.0 32 ............................ AGCCGCCATCTGCACTAGGATTATTATCTCTA 169386 28 100.0 32 ............................ TTTCGGTTCTTCGTTTTGGGGGCCTGTTGTTG 169446 28 100.0 32 ............................ GTCACTATCAATCAACTTCGTCAAGCGTTCCA 169506 28 100.0 32 ............................ TTCATCCATATGAGGCATTAAACAATAGTTGT 169566 28 100.0 32 ............................ AACTTGAACGCGCTCACCTGGTGCTGGTTCAA 169626 28 100.0 32 ............................ TAATACCCCACCTAGATTAGCAAATACCCCAC 169686 28 100.0 32 ............................ TTTCCGTGCTTATAATCTCATTTACAATGAGT 169746 28 100.0 33 ............................ TCCGCGACCAGTCCAAGTACCAGCGACATTTTT 169807 28 100.0 32 ............................ ATGTAAGCATTCCATGCTTTTGACCCTTTAAA 169867 28 100.0 32 ............................ AATAATCGGCGATTTAATCGGCATGATACCTG 169927 28 100.0 32 ............................ TCGCAATGGCACGGCTAATGAATCCGAATCTA 169987 28 100.0 32 ............................ ATTAACTCACAGCTGCAACACCAATATTTTGA 170047 28 96.4 32 .............C.............. TGCCCGTTGTTGTAGCGTTGACCATGCATCTA 170107 28 92.9 32 ..........A..C.............. GCCACGCGATACAGTGAGAACAACGGCCAATC 170167 28 85.7 0 ...A......A..C............G. | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTCCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGCTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : AGGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAATCCATAATTATTCATATTTAATTTAATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATTGCTTGGAAATAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //