Array 1 184594-181320 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHU01000002.1 Listeria monocytogenes strain FSL L7-0678 NODE_2_length_501247_cov_23.901786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 184593 29 100.0 36 ............................. GTTTACATAAATAATTCAAATTAGAAAGGGAAGATG 184528 29 100.0 37 ............................. TGATTAAAGAGTTAGATACACCCAGCTGAGCCCGTAC 184462 29 100.0 34 ............................. TTCAATACCATCATTTTTACATTTTTTTTAAGCG 184399 29 100.0 36 ............................. ATATTATATTCTAAACAAGAAAATGCATTTAATCAT 184334 29 100.0 37 ............................. GCAGGGGATATATATTGGCAGTTTGCGGAACTTGTAG 184268 29 100.0 36 ............................. CTCTATTATGTAACCTTATTAAATTGCGATGAATGC 184203 29 100.0 37 ............................. GAGCTAGTTTTTTGCAACACTAAAAAAACGGTGATCG 184137 29 100.0 36 ............................. TATGGACAAGAAGTCAATTAAAAAGTTGCCAGATGC 184072 29 100.0 37 ............................. TTTTCTAGGAAACTTACATCATAAACAGTCCGATACA 184006 29 100.0 34 ............................. TGATTTGTTACTTCTACTTGAACACTTTGACTGC 183943 29 100.0 35 ............................. AAAGAATTAAAGCAACAAGAGTTAGATTTATCCAA 183879 29 100.0 36 ............................. TTTATTAACTCCGACTATGATTGGAGTGGGGCGAAG 183814 29 100.0 34 ............................. AAAGCTATGCCACTATCTAAATCTACTATGCCAA 183751 29 100.0 36 ............................. CGCCTTGCATTGGTTAAGAGGAATCGACGGTGTTAC 183686 29 100.0 36 ............................. TAATTTCAGAAGATGATTGCGCATCATCCCAATGTT 183621 29 100.0 37 ............................. TCGTATTCCAGTGTGGAATAACACAAAACTAAATAGC 183555 29 100.0 36 ............................. GAAGATTTCGATACAAGATTCTACTTTGATGCTAGC 183490 29 100.0 37 ............................. TGTTGTTTGCGATTTATGGTTATCTTGTAGACCCGAC 183424 29 100.0 35 ............................. AAGTAAAGCCCTTGATGCAACCTATCAGTTTGATC 183360 29 100.0 37 ............................. GAGGGTATTAGACAAGTTGTCACTAAAATAGAAGAAA 183294 29 100.0 36 ............................. AGAGGTTATGGGTGGTGGTTAGATAACATTAAAGAT 183229 29 100.0 36 ............................. TGAATTGAGCTTTTGTTTTCGCTACGTCCTGTCCGC 183164 29 100.0 36 ............................. GTTGTTACGATGACGGATAACTTTGACGATAAGGGG 183099 29 100.0 36 ............................. GAAGATTCGGTTATTATCGTGAACTATGAGCGTGCT 183034 29 100.0 35 ............................. ACAATTATCCCAATTACAGGTAACATTGCAGTGAC 182970 29 100.0 35 ............................. AAAATAGAAAATGAATCAACTGCCGATATTTTCGC 182906 29 100.0 38 ............................. CAAACTATGAAATACGCGGTTGATTTTGGCTTTAATGA 182839 29 100.0 37 ............................. ATTATTACACCATTGATTATAAAGGCTAGTGATTTCA 182773 29 100.0 37 ............................. GATATGTGAAATTTTCAAATCGATTTCTCGTTTTAAT 182707 29 100.0 36 ............................. TGACTTCCAAAAATAGCAGAGATTGCCGCCGCTTTT 182642 29 100.0 36 ............................. AACCTTCGATTTCATTCACGATTATTACGAAAAAGA 182577 29 100.0 34 ............................. GAAACTGAATTCACAACATTAAACGATAGAATAA 182514 29 100.0 35 ............................. CGAGTTACTGGCAAAGGTCAAATATACCTATTAAA 182450 29 100.0 35 ............................. ACAGCAATAAGCAATGTTGCATCGCAATTAGTACG 182386 29 100.0 35 ............................. ATTATTTCTAGAGAGCGCTGGGAACAATACTTAAC 182322 29 100.0 36 ............................. TACGTATTTCAAGTGACCAAAAAAGAGTGCTTGGAC 182257 29 100.0 34 ............................. TTCGCTTTAATTTCTTACATTCAACGCCTGCGAG 182194 29 100.0 36 ............................. TAGTTCGTAGCTCTCTTTTTTCATCGGTTGTTAAAA 182129 29 100.0 36 ............................. TTTTTCTGTTCTGGAAACTTTGCCTCAAGCGCAATA 182064 29 100.0 36 ............................. CGCATAGTCGGAATAGTCCAGTTGTTGCTCAATAGA 181999 29 100.0 34 ............................. GTTACTTATAAAGCGTCTTTCGTTGCTTTAAAGG 181936 29 100.0 36 ............................. CCTTCTCCCTCTCGCCACGTATGCAAACTGCTTTCG 181871 29 100.0 37 ............................. AGTTATTCCTTTTAACAGAAATGCGTGGCACTGTGGT 181805 29 100.0 37 ............................. GAATGCCTCGTTTTACGTACTATGTAGAAAAAGACCC 181739 29 100.0 37 ............................. TTTAATGCGTCAGGTAAACGCTTTTTTCGACACTCTT 181673 29 100.0 34 ............................. AATTTCTAATCCTAAATTATCCTTATTTTCCTCA 181610 29 100.0 34 ............................. TCGCTCACATTTCAGCCCACTCATCAGCCTCAGC 181547 29 100.0 37 ............................. CTCGCTCTAGCAATTGCTCATCAAAAATATAACTCCA 181481 29 100.0 36 ............................. TTCAGTAACATGTTCGCTGTAATCACGAATCTGAAA 181416 29 100.0 38 ............................. AAGTCCGAGCGTTTTCGCTAACGCAGCTGATACATCCG 181349 29 93.1 0 .......................C....C | A [181324] ========== ====== ====== ====== ============================= ====================================== ================== 51 29 99.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGGGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTTGCAAATAACGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 200669-200189 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHU01000002.1 Listeria monocytogenes strain FSL L7-0678 NODE_2_length_501247_cov_23.901786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 200668 29 96.6 35 ..............T.............. TTTGAACCATCTATTTTTAAATTTGAAGTGACAGG 200604 29 100.0 37 ............................. AAATGGCATGCGTTAAGACAATCCCATTCTGCATCAT 200538 29 100.0 35 ............................. TCAGGAATCCCTGAGTGAGTTGAACAAAATAGAAA 200474 29 100.0 35 ............................. CCGCAAGTAGAGAAACGTCTTTCGCTTTTTAGCAT 200410 29 100.0 35 ............................. TTGATTTTATTAATGTTCTTATCAATAGAGTCATT 200346 29 96.6 36 ............A................ TCGACATAACACATATATTTAAAATCATTAAAACTA 200281 29 100.0 35 ............................. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 200217 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 96.1 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCATAGAAGTTATCGCTTGCGCAACCCACTCTGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGTAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGTTGGAGGAAGGGGAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGATCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACAAAACTCCACCAACATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAACTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTATTTTTCACTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //