Array 1 82-1086 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNXM01000073.1 Escherichia coli strain MOD1-EC6276 MOD1-EC6276_73_length_18238_cov_46.523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82 29 100.0 32 ............................. CTCTTCAGCAATGAAATCGTCAAACGAGATTA 143 29 100.0 32 ............................. CACAATTATTCGGTACGACGGGTTCAGGCATT 204 29 100.0 32 ............................. GACCAGAGATGTCGTAGCCGTATTTCGCAGCC 265 29 100.0 32 ............................. TCACCGGGTCAGATACTGATGTTATGGCTTAT 326 29 100.0 32 ............................. AATGCAGGGCTGGGATCGGGAAAAACAATTTA 387 29 100.0 32 ............................. ATTACGCCGCCTCGCGTTTTTAGTCATTTCTA 448 29 100.0 32 ............................. AGGAGTTTAATTTCCAGATTGAGCGCTGGATA 509 29 100.0 32 ............................. GTGAGTCCGTCAGCGGTGCGCCGCTGCAACAC 570 29 100.0 32 ............................. CTCGATCAGGAAAATGAATTCCTGGAAAAAAA 631 29 96.6 32 ....C........................ CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 692 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 753 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 814 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 875 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 936 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 997 29 96.6 32 ...C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1058 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGATG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGTCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 938-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNXM01000017.1 Escherichia coli strain MOD1-EC6276 MOD1-EC6276_17_length_90922_cov_49.2029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 937 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 876 29 100.0 32 ............................. CGCCAGTGGGGGAGCCGTGAGGACCTGACCTG 815 29 100.0 32 ............................. CTGACCGGATTTATTAACCCCGTCAACCGTAC 754 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 693 29 100.0 32 ............................. GGCGGCATTACTGCTGCGAGTATAACTACGAT 632 29 100.0 32 ............................. CCGCCTGATGGCGACGCGTCTTTTAACCCCAT 571 29 100.0 32 ............................. TTCGTGATTCAGGATCTGGCGATTTATCAAAA 510 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 449 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 388 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 327 29 100.0 32 ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 266 29 100.0 33 ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 204 29 100.0 32 ............................. CTCTGATTCATCGGCGGCGATACTGTCATCAC 143 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GCCAGAAAACATGAAAAAACTTTGGGAGGGGATGAGTTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 91011-90372 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNXM01000013.1 Escherichia coli strain MOD1-EC6276 MOD1-EC6276_13_length_97049_cov_49.4634, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91010 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 90949 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 90888 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 90827 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 90766 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 90705 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 90644 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 90583 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 90522 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 90461 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 90400 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //