Array 1 362640-363532 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMXU01000001.1 Streptococcus salivarius strain BIOML-A25 scaffold1_size585212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 362640 36 100.0 30 .................................... TGTTGAATACGGAACTGAGCAATGCGTTGG 362706 36 100.0 30 .................................... AATACCAAATGCTTCAAATACTTCAGAAAG 362772 36 100.0 30 .................................... TTTCGCTCGTATGCTTAACCGCTTCGCTCT 362838 36 100.0 30 .................................... TAGCTTGTGGTGCTGTATCTGTTTTCGGTC 362904 36 100.0 30 .................................... TTCTACTAAATTCTGCATTTTAATCCTTTC 362970 36 100.0 30 .................................... TAATCTCTTTGATGTCAGTCCCAACCGCTG 363036 36 100.0 30 .................................... TGTTATTCAGAACTTTGTAAGTAAAGGTGT 363102 36 100.0 30 .................................... GATTGGTCTTTTTCTTGCCGAACAATGACA 363168 36 100.0 30 .................................... CAAATGCTGAAACAGCAACGTCGTTGGTAG 363234 36 100.0 30 .................................... TACTGGTATGACTAACCTTGGTAATGGTAT 363300 36 100.0 29 .................................... AAAACCACCAACCCAACATAAAGGAGCTA 363365 36 100.0 30 .................................... CTCCGGGCTTGCCGTAACTATAATCGTCAA 363431 36 100.0 30 .................................... TATCGCGAATGGTAATAGCATCTTCATCTA 363497 36 88.9 0 .............T...............A....GG | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTATTTCAGAGGAATCTTATGATAGTTTTTATAAGCAAATCAGTCAGATGGTCAAAAAGTATCCAAACTTAACCTTTATCTTATTTCCTAGTGACCAAGGCTATTTAAAGATTGATGAAGAAAATAGCAAGTTCGTGAATATTTTATCTGACCAGGTAGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCAACGAGAGAGGATTTTAGGATGTCCTTAGAGACCGTAACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGCCTCACACTTGTTGATTCTGTAATTTTGAATATTCTAAATCAGCTGTTTCAATTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATGAAAACGTCAAAATTTCATTTGAG # Right flank : GTTGATTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGATTGTCAGGCTGACCAACCTCTTTGACCTCAGTCAAATTAAGGATAGGAAGGCTCTGTTTAAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTCACCCAGGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAATCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCTGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 320426-322308 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMXU01000002.1 Streptococcus salivarius strain BIOML-A25 scaffold2_size431198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 320426 36 100.0 30 .................................... ATTGAATCCTGAGAGTATTGGAATGGCGTT 320492 36 100.0 30 .................................... ACTAGGCAAGTATATCAAGCCTAAGTGTTA 320558 36 100.0 30 .................................... ATGCTAAAGTATACACTATGGAAGACTATG 320624 36 100.0 30 .................................... CATTCTACTTTGTTAGCATTATAGCGTTGT 320690 36 100.0 30 .................................... AGAAATTCAGCATAATTCTGATGATAATTA 320756 36 100.0 30 .................................... GCTTTAGCAATAGCATATACATAAGCACTA 320822 36 100.0 30 .................................... TAAAATGGTCTACAATCAATTCTAGACCCT 320888 36 100.0 30 .................................... CGAAACTCACCACGGTATCGGTAAGGCTCG 320954 36 100.0 30 .................................... GTTAGGGAAATTAGCTACCACAACCCCAGA 321020 36 100.0 30 .................................... CGTGGTGTTATCTGTCACGCTATCAGCTTT 321086 36 100.0 30 .................................... TTATGATTTAGCAGATTTTGAAAGCATTCC 321152 36 100.0 30 .................................... CACGCGCAACTTTAAGGATAGCCATGAGCG 321218 36 100.0 30 .................................... TATCATCAAACACTAACGACTGTATCTGGT 321284 36 100.0 30 .................................... TCATTACCTAACGTTTTCAAGTTACCAATG 321350 36 100.0 30 .................................... ATTGACTTATTCAATGCTCGGAAGCCGTAA 321416 36 100.0 30 .................................... CCTTGCTGGAGAAATTAGGCTACTCCCTTC 321482 36 100.0 30 .................................... CTCCTGTGACTTTTGTAAACACATCTTCTA 321548 36 100.0 30 .................................... ATAATTAATTAAATAATTGAAGCGGTGGGA 321614 36 100.0 30 .................................... AGTTTCCTCACTAGCTCACTGCTACGGCTA 321680 36 100.0 30 .................................... TTCAAGCTCGAAATTTAGAAAAGGGCTAGT 321746 36 100.0 30 .................................... ATATAATACTGCTAAAAACACCCTCTAAGG 321812 36 100.0 29 .................................... AGTTTCCTCACTAGCTCACTGCTACGGCT 321877 36 100.0 29 .................................... TTCAAGCTCGAAATTTAGAAAAGGGCTAG 321942 36 100.0 31 .................................... AGATAAAATGCGTTGTCCATTAAGGATAAGA 322009 36 100.0 30 .................................... ATATAATACTGCTAAAAACACCCTCTAAGG 322075 36 100.0 30 .................................... ACGTCTCTAATGTAGTTATTTAGATTGTTA 322141 36 100.0 30 .................................... TTCCAAAATGTTACCCCCCTATTAGAAAAC 322207 36 97.2 30 .........................A.......... ATAGGTATTATATGTCCACTTCTCGTTTTA 322273 36 83.3 0 ............AC...............T..CTC. | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.3 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGACGGATTGGGAGGTTTCAACAATTTGTTTTAGATAAAGATTACATTTTGATGCCCTATAATAACTAGTAATTTGGTAATGAGTATAGATAGTCTTGAGTTATTTCAAGACTATTTTTTTAGTGTTTAGTGTTTCGGTATAAAGTTGAGTAGAAGAATCATTTTGTTAGAGAGTAGATTATAAGGTTTTGATAGAGGAGGAGTTAAATTGGTTGCCATAAGATTCCTAAGAAATACTCCAATATGGTGACAGTGACATTTTGTCTAAAACGTTGATATATATAGCTTTTTAAGGTATAATAAACATAAAAACGGGATCATTTTGAAGCTGAAGTCATGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAAAAAAAGACAGTCTACGAG # Right flank : CCTCTTTATAACGATTTTCGGTTGACTTCTCTTCAAACGAATCTTATCATAGAGGAGTATAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGATTTTGGTCGTGGCATTAGGGCAGATTCTTTACCTCTTGCCATGACAAAAGCGTCTGTGTTCTTATCACATATTATTAAGGGGTATGGAGATAAGGCTTTACCTGAGCCGACTGCGGTAAGCAGCATTCCTAATGAGGAAGAACTCGTCGTGTTAATCCAAACAGAGCTTGATTAAGACTAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAAAATTTGTAAATACGAGAAGGGTTCTCCTAAGACGACGACAGCCGCTAGAATTGAGATAATTGTCGAAATCCCAATAAAGGATGCTGTTCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //