Array 1 165540-163375 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCQE01000011.1 Salmonella enterica strain ARS-CC274 NODE_1_length_605142_cov_81.9482_ID_17398, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165539 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 165478 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 165417 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 165356 29 100.0 32 ............................. CGGTCTGTAGTCGCATGGCACGTCCTTCGGGG 165295 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 165234 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 165173 29 100.0 32 ............................. ACCATGCATTGAAATGCCAGATGAAAATTGGG 165112 29 100.0 32 ............................. CTGCGGGTATCAAAGCGTTCAACGTTCTTGTC 165051 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 164990 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 164929 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 164868 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 164807 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 164746 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 164685 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 164624 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 164563 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 164502 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 164441 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 164380 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 164319 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 164258 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 164197 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 164136 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 164075 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 164014 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 163953 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 163892 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 163831 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 163770 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 163709 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 163648 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 163587 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 163526 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 163465 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 163404 29 100.0 0 ............................. | A [163377] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185458-183172 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCQE01000011.1 Salmonella enterica strain ARS-CC274 NODE_1_length_605142_cov_81.9482_ID_17398, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185457 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 185396 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 185335 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 185274 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 185212 29 100.0 32 ............................. CCTTTCGTGTCGTCTGCCTCGCTGGTTACCGT 185151 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCGCTCTGAATCTGG 185090 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 185029 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 184968 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 184907 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 184846 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 184785 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 184724 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 184663 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 184602 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 184541 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 184480 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 184419 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 184358 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 184297 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 184236 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 184175 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 184114 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 184053 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 183992 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 183931 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 183870 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 183809 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 183748 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 183687 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 183626 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 183565 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 183504 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 183443 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 183382 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 183321 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 183260 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 183199 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 97.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //