Array 1 12616-8659 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMNU010000035.1 Phocaeicola massiliensis strain 1001713B170131_170501_D10 NODE_35_length_46258_cov_37.7401, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 12615 47 91.5 29 A...............A.............A..............G. AATTCGCGTAGCTTATCCCTGTCGGTGCC 12539 47 97.9 30 ................A.............................. TGAAGATAGGATGGGCAATAAAAAACCTTT 12462 47 97.9 30 ................A.............................. CGGAGGTGTTTATGTATATAAGTAAGGAAG 12385 47 97.9 29 ................A.............................. GCTATACATAATATAAAAGTTCATCATGG 12309 47 97.9 30 ................A.............................. ATGGAAGCAGAAGTAAAACAAGTAATCAAG 12232 47 97.9 30 ................A.............................. TCAAAAATTACTTCTAATATCTTTTTTTAT 12155 47 95.7 30 ................A............................G. TAGGCAGCCAAGAAGGATTAATTCAATACG 12078 47 97.9 30 ................A.............................. TAAATTATACAGATATGGAACTGATAAGAA 12001 47 100.0 30 ............................................... TGAATCTATTCAGAATCGAAAAAATCAAAG 11924 47 100.0 29 ............................................... GCCATATCCAAATAACAATCAAAATCCAA 11848 47 100.0 30 ............................................... GTTATCTGAAAAAAGCGGAGGAAGAGGTAA 11771 47 100.0 30 ............................................... TCGAGTCGTACGTCAATACCTGTCCTTCCT 11694 47 100.0 30 ............................................... CTCTTGGGTCGCATAATCTTCGATTGGCGA 11617 47 100.0 30 ............................................... ACAATACATTCGACCTCTATAACGATAGAA 11540 47 100.0 30 ............................................... TAATGCCTATTAGTGATGCTGAAGGCTATG 11463 47 100.0 30 ............................................... CGGGAGGGGAACCTGATACTCAACGAGGCT 11386 47 100.0 30 ............................................... GGAAACTCATAGTTGCACCTAACGAAGCTC 11309 47 100.0 30 ............................................... TTTTATCCATTCTTTATTTTCCATCTATAA 11232 47 100.0 30 ............................................... TAACCTGAAACAGGGTATCAAAAGTATTAT 11155 47 100.0 29 ............................................... CATCGGCAGATATGCAGTTTTTAGAAAGC 11079 47 100.0 29 ............................................... CACGGATGTGGCTTACAACATGGTTTATT 11003 47 100.0 29 ............................................... TATATCAATAAATCACAAATCGAAGAACG 10927 47 100.0 29 ............................................... CAACAATGAAATTACGGGGCAACTCTTAC 10851 47 100.0 30 ............................................... TATTATCTAGTTATAATGTATAGCTCTTTA 10774 47 100.0 30 ............................................... AACACTGGTGTGTAACAGAACTAGGAGAAG 10697 47 100.0 30 ............................................... ACTCTTGAACAAATACTTTATGCATTCGGG 10620 47 100.0 30 ............................................... GTAATAAGGTTGCTTATAATGCCTATAATA 10543 47 100.0 30 ............................................... CTTCGGCAGGTGGATAGTAACCGAACACGT 10466 47 100.0 29 ............................................... GAATTATATGGCTAAAATTCATAAACTTA 10390 47 100.0 30 ............................................... TTCCTGTCAACCAACGAATGAACAAGTATA 10313 47 100.0 30 ............................................... AAAACGCTTGGTGAAACCTCATGGATGGCA 10236 47 100.0 29 ............................................... TGAAGAACGTGTACGGGACTCTCTATACA 10160 47 100.0 29 ............................................... GTAAATTGTCTGTCAATGAGGCTCGTTGA 10084 47 100.0 30 ............................................... TTGTATTGCCTACTCCTGTGAAATCAACAG 10007 47 100.0 30 ............................................... TTCATGAACACGTATATGCGTCGTTGAATC 9930 47 100.0 30 ............................................... AAGGCTGCTCCCGCCAAGAAGTCCGCTCCT 9853 47 100.0 30 ............................................... TATCAACGATATCACAGGTGGCTTGCTGGG 9776 47 100.0 29 ............................................... GACAATCTGGGGTGAATATGGTCACACTA 9700 47 100.0 30 ............................................... CCATCAAAACTACAGGAGCAATATCGCTCA 9623 47 100.0 29 ............................................... GTCTGAAACCGCTTCCTCTACTTGTTCAT 9547 47 100.0 30 ............................................... CAAACTCCCTATATCCTTTTGCGAATTTGG 9470 47 100.0 29 ............................................... GCTTCCGACTGCTTTTTGTATTTGGTATC 9394 47 100.0 29 ............................................... ACATCGACCGCACACTGTCCAAAATATCC 9318 47 100.0 30 ............................................... TATTCGGAATATATAGAATTGAAGAAACGG 9241 47 100.0 30 ............................................... CTTTACATGGTTCGGAAAATGCTTATTCCA 9164 47 100.0 29 ............................................... GCTTTCTGTGAACAGTACCACGTTCTCGG 9088 47 100.0 30 ............................................... AAGAACTAAAGACCGAAACCAAGGAATTGA 9011 47 100.0 29 ............................................... AATGTGCGAAAGAACAGCTTCAGGAACTA 8935 47 100.0 30 ............................................... TAGATGCACCGGGAGCAGAGGAAGAAGACA 8858 47 100.0 29 ............................................... GCGTTATTATCCAAAAGATCGTTAATCCT 8782 47 100.0 30 ............................................... GGAAAGCGAAACAATGAGACCGAATGACTG 8705 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 52 47 99.5 30 GTTGTGATTTGCTTTCGAATTAGTATCTTTGAACCATTGAAAACAAC # Left flank : CAGCAAGTACCCAAACCCTGCTCGGTAGCAGCCAGACAGAGATGTTCCACCGCAATAGCTATATCAATATCTGCATGATCTTTATTGTCGGCACGACGATGCCAAGACTCTTCATGGTTTGTGCAAGCCACAATGATACAGGGAGCTGTGGCAAGCCACTCACGCTTATAGCATTGCTGCAACGCCTTTAATGTAGGTTCATCTGTGACTATTTTAAACCGCCACGGTTGGAAATTAACTGCCGAGGGAGCCAAGCGTACACACTCCATGATATACTCCAATTTTTCTATCTCAACCGAACGACCGGCATATTTGCGGGCAGAATAGCGCGCTTTTACTAATTCTAGAAAGTTCATAAGCATTATTATTAGTTTGCAGACAAAAATACTAACTTTGCTAATATATCCCAAGCTTTTTGCAATGAGTATCATTTATCAATTGCTTACGAACTATTTATATTCTCATTTTGTAATTTTCAATCCTATTATTATCAAATTACT # Right flank : TGAATATATGTTACAAGCTAATTACCAATTAGTTACACATATATTCAGAAATTAAAAACAAAGTTGTTTTCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCGAATTAGTATCTTTGAACCATTGAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.70,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 613-1172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMNU010000037.1 Phocaeicola massiliensis strain 1001713B170131_170501_D10 NODE_37_length_45142_cov_29.357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 613 32 100.0 34 ................................ TGATGCTACATCCACCATGAGCATGGTATTTATG 679 32 100.0 35 ................................ ACAATCACCTCAGCATTTCGGACTCCCGAACATAA 746 32 100.0 33 ................................ GAGCTATTGCAACAGCGAGTCAAAGATGTCGAC 811 32 100.0 34 ................................ CTCAGCCTCTCACCTCTTCACGCGACTCACCTCT 877 32 100.0 34 ................................ TACAGTTACATCTACAAACATTACTATAACGAAT 943 32 100.0 34 ................................ CTATCAAAACATTAGGCTTAGCTGATTTGTTAAG 1009 32 100.0 34 ................................ AATGCCTCGATAGTAGGATACAGCCCCTTGCTGC 1075 32 100.0 34 ................................ TCCATACAGCGAGAAGCAATACTTAACCAATACA 1141 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 100.0 34 GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Left flank : CTAAAATGCTGCGGAATTTAGGATAAAATGATTTACGAGTATGTATATTCTTGTAACTTATGATGTGGATACTACGAGCAAGGAAGGAGCTCGCCGTTTACGGTGTGTGGCTAAGGCTTGCATAGATTATGGACAGAGGGTACAGAATTCTGTCTTTGAATGTGAGGTGACAGAAGCACAATATTGTCTCTTGAGAGGAAGAATCAAAGATATCATTGATATGTCTCGTGATAGTGTTAGATTCTATATTCTTAGTAAAAATGAGAATAGAAGGGTGGAAGTGATAGGTGTCGAAACTGCTTATAAAGTTAATAATGCTTTTATTGTATAATGTGTGCGAATGTGGAGTGTTGCAAAAAAAGTAGTATCTTCGCAACTCTTAATAATCAGCAGATTGGCTTGTTTATAAGGCGAATGCCGTTATTCAATTGAAATAAAAATGAGAATTCGCATATTAGTAGGGTTAATTTATTGATTTATAATATACAACTCTGTATACA # Right flank : CTAATGTGCAAGCTACGCCAGTAGGACCATTGAACTTACGCTACAGACGCTACTTTCAATCTTCCTCTTTTAAAAAAGAAACAAACTCGGGGGTGAGTTTCGTTCCTTCGGCAGCAAGGTCATCGTATGTATAGGAAAAGGGTTCACCGGTGGCTTTATCATACCAGCGACGATGCCGGACATGAAGATAGACAGGTTTACCACGCAGAGAAAACTCCTGAATTACTTTTTCATCTATAAAACCACTGGAAATGACAGTACCGCTCTTGTAATCAAAACGTTCCATATAATTCTTCTCATCAAGCCAAACTTCGATTTTTGAAGAATCGTCATGCCAACCGGATATATCGAAATATTCCATTAAAACTTCAGAGAAGATTATCCGAAGTAACTTATGCAGACTACGATTGGGATTCATTGGATTGGTTTGTTTAATTTAAATGCAAAAATAATGTTATTTGGATAATCTACACGGATCACCCACAGGATTTTCGGATTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //