Array 1 2061489-2063531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007519.1 Trueperella pyogenes strain TP6375 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2061489 29 96.6 32 ............................G TTCGGCCATGCCGGGCTTGTAGGTGAGCCGGT 2061550 29 100.0 32 ............................. CCCGGACCGTCAGGATTCAGCTCCAAAGCGTG 2061611 29 100.0 32 ............................. AAAAATGAATGTTCGTGAGCTTATCGAGCTGT 2061672 29 96.6 32 ............................G CAATCACGCCCCGGCGCGGGCCTCAAGATTCC 2061733 29 96.6 32 ............................G CTCGAAACCGCTAGGAATCGCGCAGCCTCCAC 2061794 29 96.6 32 ............................T CAGGCAGGGCCGTAAGGGTAGCTGCCGGTGGG 2061855 29 100.0 32 ............................. GACGCTACGTGCGGTCAACGATTTGCTTACGG 2061916 29 96.6 32 ............................G CCCGTATAAAAGCCCAGGGATTGGAAGTATCT 2061977 29 100.0 32 ............................. ATCGCGGCCTCGAGCGTGAATGAAGCTGCCGA 2062038 29 96.6 32 ............................G CACCCTCAATGAGGGAGCCCAGGAGCGCATCG 2062099 29 100.0 32 ............................. CCCCACACCGTGGGGCAAGACCATGAAGGTCA 2062160 29 100.0 32 ............................. TGCTCCTAGAAAATGATGGACTGGTCCAGGAT 2062221 29 100.0 32 ............................. AGCCACAATCACAATCAAAACGGTCGAGCCAC 2062282 29 100.0 32 ............................. GACGTCGCCGCCCTCAAACTCACGCACTCCGT 2062343 29 100.0 32 ............................. TGAAAAGCCGTACCTAAGGCCCATACGGAAAC 2062404 29 96.6 32 ............................G CCGTAACAAAGTTGATAACTTCCATATCTGAG 2062465 29 100.0 32 ............................. AGGTTGCGGATCTTGGAAAGGCCGGAGGATAC 2062526 29 96.6 32 ............................G ACCACAAAAAGAAAACTGATGAGCGCCTCGCC 2062587 29 100.0 32 ............................. TGACGCCCTCGTTCACGGGGCAAATGGTGACA 2062648 29 96.6 32 ............................G GTACGCAAGAGCCCAAAAGACGCACAAGAGAG 2062709 29 96.6 32 ............................G GAAATTGGGCAGGCGCATGGAATGCGTTTAAG 2062770 29 100.0 32 ............................. GTGCGCACACCAGCCCTCCCTCAATGGGCACG 2062831 29 93.1 32 .........A..................G CGTACGCCACGGTGGAGGGCGACGCCTGCTTC 2062892 29 96.6 32 ............................T CGTGTGCTTGATAAGAAGCAGTTATCTGAGGA 2062953 29 100.0 32 ............................. AGCTTCCGCGGTCGTGATCGTGTTAATAAAGC 2063014 29 100.0 32 ............................. GAGTTACAGGAGGAGCGGGAGAAAGCGAACGC 2063075 29 100.0 32 ............................. AGCTTCCGCGGTCGTGATCGTGTTAATAAAGC 2063136 29 100.0 32 ............................. GAGTTACAGGAGGAGCGGGAGAAAGCGAACGC 2063197 29 100.0 32 ............................. CTGGAAGACGCCGACCTGTGGGGTGCTGACCT 2063258 29 96.6 32 ............................T AACCACTGGTGCTGCGAGCCTGGCCAAGCCTC 2063319 29 100.0 32 ............................. CTGGAAGACGCCGACCTGTGGGGTGCTGACCT 2063380 29 96.6 32 ............................T AACCACTGGTGCTGCGAGCCTGGCCAAGCCTC 2063441 29 96.6 32 ............................G ATTTTGATCTGGCTAACGAGCTTTTGCACAGA 2063502 29 93.1 0 ..........................T.A | C [2063527] ========== ====== ====== ====== ============================= ================================ ================== 34 29 98.2 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGGTGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGATTGAACTGTTTGGGTGTCCAGATTTTTGATAGTTCGAGAATTGTAGATTACACGCGATGGTAGTGGATAGAGTGGATCCTGAGATATCCATTGGGCCATCCTCAGGTAGGGCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAATGCTGGTCAGCAAGT # Right flank : AGTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATCGCCAGGCGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCACGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCGGGGTCCCCATTTTCTTCCGTATGATCCCTGATATTTGACAGATCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGAATTGGTCAAAGTC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //