Array 1 2057250-2056367 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEFM01000001.1 Escherichia coli isolate E.coli C158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2057249 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGCAATCCGCA 2057188 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 2057127 29 100.0 32 ............................. CCACCCTCAGATCGCCCTTGTACATCATGTAC 2057066 29 100.0 32 ............................. CGCACCGGCTGAGCCAGCAACAACAGAAACCG 2057005 29 100.0 32 ............................. ATCCGTACCGGCTGCGCCGGGCTTCGGCGGCT 2056944 29 100.0 32 ............................. GGCGTGAATGAGGAATTGAACTTTGCATTCAA 2056883 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 2056822 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 2056761 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 2056700 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 2056639 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 2056578 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 2056517 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 2056456 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 2056395 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2084627-2082952 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEFM01000001.1 Escherichia coli isolate E.coli C158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2084626 29 100.0 32 ............................. CCAGCGACCGCGACATCTCTCTATATCTCCAG 2084565 29 100.0 30 ............................. CTCCCGTTTTTGGGTACATTCGTTTTTGAT 2084506 29 93.1 32 A....T....................... GTGGCTGAACTTCCGATGCGATGAATGTTATT G [2084502] 2084444 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 2084383 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 2084322 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 2084261 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 2084200 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 2084139 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 2084078 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 2084017 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 2083956 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 2083895 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 2083834 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 2083773 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 2083712 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 2083651 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 2083590 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 2083529 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 2083468 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 2083407 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 2083346 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 2083285 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 2083224 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 2083163 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 2083102 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 2083041 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 2082980 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //