Array 1 38826-40473 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVCZ01000011.1 Shewanella algae strain RC scaffold00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38826 28 100.0 32 ............................ ACACCGAAAGTCAGGAGCTGATTCGGGTTAGT 38886 28 100.0 32 ............................ TAATGCGCCGCCTGATGATAGTCACCACAGCC 38946 28 100.0 32 ............................ TTCAACAATATACGTTCCTGTTGACGTGGTAA 39006 28 100.0 32 ............................ TGAACCAGTTCAATGCTCCAGCCGCTGTTGGC 39066 28 100.0 32 ............................ TGTTATCGAATACTGTTTATCTCCTTTGTCGA 39126 28 100.0 32 ............................ TGGCTGCTGAGGTATAGCTGTTAGAGGCCCAT 39186 28 100.0 32 ............................ TTTTTGCTCAAACTCCAGGAACAGATTGAGCA 39246 28 100.0 32 ............................ TGACTGAGCGCATCGCCACGCATAATAGGCTT 39306 28 100.0 32 ............................ CATTCACCGCCGGCAGAATGGCGCTACCGAAG 39366 28 100.0 32 ............................ TTGCTATACCGAAGAAATTGACGACGTTATCG 39426 28 100.0 32 ............................ TTGGTAAGGTGATGCCCCTCATCCATCATCCA 39486 28 100.0 32 ............................ GGGTCGTGAATGGGAAGGAAAAATCCAACACT 39546 28 100.0 32 ............................ ATCAAAAACAAACCAGGGCAAACAATAGTTAC 39606 28 100.0 32 ............................ ATAGAGCGCAAATAACAGGGAAACGGCGCTAA 39666 28 100.0 32 ............................ TACCGGAGAAAATGTCACGGCAATAAATGATT 39726 28 100.0 32 ............................ AATAAGCAAATCCGGAAAAACAGGATCTCCAA 39786 28 100.0 32 ............................ TTACGGTAGCGACGAGTCCAGAGAGATCAAGG 39846 28 100.0 32 ............................ TTATGAACAACGCCTTGTTTATGACCCGACCC 39906 28 100.0 32 ............................ GCCAAGGCGCCGCGCGAAAACCCGCAGCGGTT 39966 28 100.0 32 ............................ ATCCTGTCTTATTAATCATTAATCGACTATCT 40026 28 100.0 32 ............................ TCTTGTTCCAGAGAATCGTTTGCAGAGGCGCT 40086 28 100.0 32 ............................ AGTACAATGGGGCTGGCCAGAATGTTGAAGAT 40146 28 100.0 32 ............................ GGCAACGGTCAGCACCTGGCACTGGCCTCGAT 40206 28 96.4 32 .............A.............. ATCTGCAACCGGCCTACGGCGGTAAGAGACAA 40266 28 100.0 32 ............................ TTTAGCCGTATTCCCAACGCTGTCCATGTTGT 40326 28 96.4 32 .......A.................... ATTCAAAGGCACTGCGCCCGCGGTATACCCTA 40386 28 100.0 32 ............................ TAGAATAGCGAGAACCGTTAGAAACGTGTTTG 40446 28 89.3 0 .........T..T........G...... | ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.4 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGCAAAAAGCAAACCGACAGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCGGCAAAGTACACCTGTGGATGGGCTGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGAACTTTTAAGCACCAAAGGATGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGGTCTTCTGGTGAATTACCCTTGAGCCTTGCCGTGCTCCCTCCACAACGGGGGATTTATCACTCGGCCCCAGCAGTATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATGTCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTTTCGTCGCTGACCGACAGTTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGTGGCATCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGAGAGCGAATAAGCGGGGCCGAGTTGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //