Array 1 36872-38039 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSRK01000020.1 Pseudomonas aeruginosa strain DUN-001-4 IPC985_20.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36872 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 36932 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 36992 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 37052 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 37112 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 37172 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 37232 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 37292 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 37352 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 37412 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37472 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37532 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37592 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37652 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37712 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37772 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37832 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37892 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37952 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38012 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48752-46564 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSRK01000020.1 Pseudomonas aeruginosa strain DUN-001-4 IPC985_20.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48751 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 48691 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 48631 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 48571 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 48511 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 48451 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 48391 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 48331 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 48271 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 48211 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 48151 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 48091 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 48031 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 47971 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 47911 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 47851 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 47791 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 47731 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 47671 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 47611 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 47551 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 47491 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 47431 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 47371 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 47311 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 47251 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 47191 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 47131 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 47071 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 47011 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 46951 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 46891 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46831 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46771 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46711 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46651 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46591 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 37 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 158115-158572 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSRK01000009.1 Pseudomonas aeruginosa strain DUN-001-4 IPC985_9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 158115 29 100.0 32 ............................. CGACAGGTACGACTGGCGGTTGATCTCGATAG 158176 29 100.0 33 ............................. TGAACCCATCCACCACCGCCGAACCGTCCTGCA 158238 29 100.0 32 ............................. GGGTTCAACGACTGCGGAAACCGTCCGGCACC 158299 29 96.6 32 ..............T.............. CAGCCAGCTTCGGCTCTCTGCATTGTTGAGCT 158360 29 100.0 32 ............................. CCGGCCAGCCAGGCCGAGGGCGCGCTGTTGTT 158421 29 100.0 32 ............................. AAGGCTTCGGCAGCCTCCTTTGATATCCGCGG 158482 29 100.0 33 ............................. GCGGCCGAGGACCTCGACAAGCTGGTCGACTCC 158544 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.2 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CCAGCTCGACAGCGCGCGGAACTTCATCGCCGCCTATGCCTTGGAAGGCGAGTGGCTGCCGAGAGAGCGGGTCCATGGCTTCGGGGCGCTGATTGGCCGACCCTTGGGGCGTCTCGAGCGGTGGATGGTCTCCATCAACTACAAGGGGGAGGAGCAGTACAGCCCGATCCCCAACGATGCCTGTGTCCTCAGCCATCGCGACCTGATCAAGGCGATGGTCGCGACTCCCGGCGACCTTCCTGTCTCCACCGACGAGATGTTCGAGCTCGCCCAGGCGGCGCTGATGAACCTCAAGAGCCGCGCCACAGTGCAACAGCACCAGTTGCGGCAACTGCGCCAAAGGGTCAGGCAGTGAATGCCCCATCGGCATCCTCTGAGCACCTCAAGATGGAGCACGCTGGTATAAATGGGGGCCTTCCGGGGTAGCGCGAACGCCCGTTTTTATCGGTGGAGTTTTTCCTGCTATTTTTCTTATTTCAAAACAATGATATACGGAAAGT # Right flank : TGCGCTGCAGGTGATCCGCCTGACGCTGCGCAAGTGCCCCTACTGATGCGGGGGTTACCTCATGAGCGCAACCCTGGCTGGCTTGGGGCAGTAGGGGATGGCCGTAAACGGCATGGAGAGGGCGCCTTCTGGCGCCCTTTCTGTTTCTGCCAGATGAGCCCTGGGTTTTGATGTTGGCCAGGTGATGGTAGATTGCGGGCTTTTAGGAGGCTGGATATGGAAAGCGGCTCTTCTTTATTGCTTGGTTTTGTCCTTCTGATTGGAGGTGTTGTCCTCTACTTTTTACCTGCAATAATCGCTGAAAATAGAAAGCATCATAATAAAGGTGCGATAACTGTATTAAATGTGCTTCTCGGATGGACCTTAGTGGGATGGGTTGCCGCTTTGGTTTGGGCTGCGTCTGCCACAAGAGTGAGTGAGAGAAACAATTCTGTGGGTCGAAATAATCTAAATCTGCAAGCTCAAGCAAGTGATGTTCGACCATGTCCGTATTGCGCCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //