Array 1 143975-143016 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NAXK01000007.1 Streptococcus agalactiae strain NNA028 contig17, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    143974	    36	 100.0	    30	....................................	CTTGTTTTGCAAGGTTCATGATTGCCCCGA	
    143908	    36	 100.0	    30	....................................	AACAGAGACAGGTAGACAACCGCATGCTTT	
    143842	    36	 100.0	    30	....................................	TGAAGCTATTGTCTTAAACTCAAAAACTTT	
    143776	    36	 100.0	    30	....................................	TGATTATAGTTTAGAAGCTCCTTACGATGA	
    143710	    36	 100.0	    30	....................................	TCCTAAATCACTAAAATTTCCGATAATAGA	
    143644	    36	 100.0	    30	....................................	GTTTTCAAAATTGATAACTACTTCATCTCC	
    143578	    36	 100.0	    30	....................................	ATCTAGTTTTGGACGATTTAGGTGCTGAAA	
    143512	    36	 100.0	    30	....................................	AAACCACTTGATGCTGTATCTCTCATAAAA	
    143446	    36	 100.0	    30	....................................	ATTGTGATACAGATAGTTTATACCTAAAAA	
    143380	    36	 100.0	    30	....................................	TGGTTTAATACTGTAAATTGTTCAATATCA	
    143314	    36	 100.0	    29	....................................	CCCTCAATTTATTGACATTATTAATATAA 	
    143249	    36	 100.0	    30	....................................	TTATTCTCAACAGTAGCTAAAGTTGCTTTT	
    143183	    36	 100.0	    30	....................................	AAAAAGAGCCAGAAACTCAATCAGAAGAAA	
    143117	    36	 100.0	    30	....................................	TGGTGTTGGCTGTTCTGGGATGACTACGTT	
    143051	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        15	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  TTTAATATCGTCTATATAGATTCCTGGACGGTTTTAGAGCTGCGCGGTTATTATGCTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTAGCAAGCTAACGAAATCATCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATATAGAGTTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCGATAGAAGAGATATGAAAGACTATAATTCCAACCTTATTGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGATGGATCTCACCTATTAA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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