Array 1 109527-110089 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTXV01000005.1 Bacillus pumilus strain Ha06YP001 Contig_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 109527 32 100.0 34 ................................ TCGCCCTTTTTGTCGATCTTATAGCCTAAGTCTT 109593 32 100.0 35 ................................ TTGAAAGCAACACTTCTAGTCTGTTTTGCTTTAAG 109660 32 100.0 34 ................................ TTTACAAATAGTTTCTCCTGCAGCTTGTAAATAT 109726 32 100.0 35 ................................ TTGAAAGCAACACTTCTAGTCTGTTTTGCTTTAAG 109793 32 100.0 34 ................................ TTTACAAATAGTTTCTCCTGCAGCTTGTAAATAT 109859 32 100.0 35 ................................ TTGAAAGCAACACTTCTAGTCTGTTTTGCTTTAAG 109926 32 96.9 35 ...........T.................... AACGCTGAGGATGCACCAGAAGGAAAGAAAGACGC 109993 32 96.9 33 ...................T............ ACAGTAGCCGTATTAATTACAGGTCTTATATTT 110058 32 78.1 0 ...........TC...A..T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 9 32 96.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAAATAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGGGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACTGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACAAAACTGGGTAAAAATGTATATTTCGTGAAGAAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTCAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACAAAATGGGTAAAAATGTATATTTCGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATCCCCAACTTTGTACACCGCCTATTGTTGGTAAGTGTCGCACTCTATATGAGTGCGTGGATTGAAATATGCTGTTTCCAAAGTCAATATTCATACGAGAAAGTCGCACTCTACATGAGTGCGCGA # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 118217-118409 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTXV01000005.1 Bacillus pumilus strain Ha06YP001 Contig_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================================================== ================== 118217 32 100.0 34 ................................ AATTTCCTCCGGCCATTTTTTTGTTAGTGATGGT 118283 32 100.0 63 ................................ CTCTCAATTTGATAGTTAACTTGTTGCTTAAAAGTCGATGGTTCAGCTTGATGTTTTTTTCAA 118378 32 81.2 0 A.................AT.A...G.A.... | ========== ====== ====== ====== ================================ =============================================================== ================== 3 32 93.7 49 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GATGCCTGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGGCCCTCGAGACGATGACTCACCAACACCTATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAATCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCGGGTTATGGAAGACTTAAAATGGACGACGTCATCTAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACGAAAATGGTAAATGATGTATATTTTTTAGAGAGGAAAACAAAATTCTATATAGAAACTTGAGGATTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTTATCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGTTGTGAAAAACAAAACTCTGTCTCAGCCTTTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTTTAAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTAGCTATCATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTCTAAGGGGGATAGCTGTTTTTTTGCCCTTATGTCGCACTCTACATGAGTGCGTGGATTGAAATACACTTCAGCGTGCCGTCAGATTGATACTGAAAGTACGTCGCACTCTACATGAGTGCGT # Questionable array : NO Score: 6.54 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:-1.49, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 118754-119117 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTXV01000005.1 Bacillus pumilus strain Ha06YP001 Contig_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 118754 32 100.0 32 ................................ TCTAAGGGGGATAGCTGTTTTTTTGCCCTTAT 118818 32 100.0 37 ................................ ACACTTCAGCGTGCCGTCAGATTGATACTGAAAGTAC 118887 32 100.0 34 ................................ CTTCAGTGTATAGTTCGTTGTGTTGAAAAGGGTC 118953 32 96.9 33 ...........A.................... TCTAACTTTTCGGGTTCTTTTACAGATGTCCCG 119018 32 100.0 35 ................................ CTTGCTTGGATATGTCGGTTTATTTGGTGTTTCAG 119085 32 90.6 0 ...................GA......A.... | T [119114] ========== ====== ====== ====== ================================ ===================================== ================== 6 32 97.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCTCCGGCCATTTTTTTGTTAGTGATGGTGTCGCACTCTATATGAGTGCGTGGATTGAAATCTCTCAATTTGATAGTTAACTTGTTGCTTAAAAGTCGATGGTTCAGCTTGATGTTTTTTTCAAATCGCACTCTATATGAGTATGAGGAGTAAAATTCTTATCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGTTGTGAAAAACAAAACTCTGTCTCAGCCTTTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTTTAAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTAGCTATCATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTTTGATTAACAAGTTTCAATATATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTTTACATGAGTGCGTGGATTGAAATTTTCTCCTAAATAATCATATTTTTTCAAAGCAGTCGCACTTTACATGAGTGCGTGGATTGAAATTCTTTTACATTATCGTCAACAATGAATGGAAGTTGTCGCACTTTACATGAGTGCGTGGATTGAAATATATATTGTTTCTGGGTTGTTAGTGATAAGTGAGTGTCGCACTTTA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 119409-119904 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTXV01000005.1 Bacillus pumilus strain Ha06YP001 Contig_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 119409 32 100.0 32 ................................ TTTCTCCTAAATAATCATATTTTTTCAAAGCA 119473 32 100.0 34 ................................ TCTTTTACATTATCGTCAACAATGAATGGAAGTT 119539 32 100.0 35 ................................ ATATATTGTTTCTGGGTTGTTAGTGATAAGTGAGT 119606 32 100.0 35 ................................ CAGTTGTTGTTATTGTGGGTCTGGCAGTGCCTATT 119673 32 90.6 35 ........C..T......A............. TTATGTATTTCCACTACTGTTCCTTCCCCATATAA 119740 32 93.8 34 .........A....A................. AATTGCAGAGTCTATACCTTGCACTTGTACTCTT 119806 32 93.8 35 ........C..T.................... ATTACAGTTTCATATCCCTCCATAGCTCCGTTGAC 119873 32 93.8 0 ........C..T.................... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.5 34 GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Left flank : GGATTGAAATCTTCAGTGTATAGTTCGTTGTGTTGAAAAGGGTCGTCGCACTCTAAATGAGTGCGTGGATTGAAATTCTAACTTTTCGGGTTCTTTTACAGATGTCCCGGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTGCTTGGATATGTCGGTTTATTTGGTGTTTCAGGTCGCACTCTACATGAGTGGATGGATTAATAATTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTTTGATTAACAAGTTTCAATATATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TAACCTTTTTCAATCCATCAAGGATAGCCAGGATGGATTGAAAATGTCTTGGATATCGAGATAGCGCAGTAATTCGTCGTCACACTCAACATAAGTGCATAGTCCACAGTTTCTGCGAATTACATAAATTCAAATATCTATCCCCAAAAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACGAAAGGATAGTGACCTTTGCTGCGGTAGCGTAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAAGCTGAAATGTTTTCGTCTTGTTTGGCAATTTTCATAATTTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATGCT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //