Array 1 92205-91361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNOJ010000001.1 Clostridium sp. BSD2780061688b_171218_E8 NODE_1_length_614606_cov_76.9747, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 92204 33 100.0 32 ................................. CGTACATCGCGCGGGTCAACAGGTCTTGCTGC 92139 33 100.0 36 ................................. TCGAATAGCGTTGTCATTCCGCTCGACCAGCGGCAG 92070 33 100.0 35 ................................. TTGTCCGTCGCAGGCATCGCACGGCGGGCACACGC 92002 33 100.0 33 ................................. TCGTTCTAGGGGCCCCGCAAGGGGCCCCTAAAT 91936 33 100.0 34 ................................. GTGGACGATACAACAAAAGATAGTACACATTATG 91869 33 100.0 35 ................................. CGGGTACGCCAGCGACACCATATATCCGGCAGACT 91801 33 100.0 35 ................................. GTTGGGGATTTCCTCGTAGTCAACGATATCCTCAA 91733 33 97.0 34 ...........A..................... TTCCGGTGTACATACCGGCAGTTGATCGTCTGGT 91666 33 100.0 35 ................................. CCTCGCGTGATATGCACCCGCCCACAGTGCGGGCA 91598 33 90.9 35 .......T......A.....T............ CTTTATGATGATCCCATATGGGTATACTGTATTCC 91530 33 93.9 35 ............G.A.................. TTGCAGTCGTTGCAGACCGTGTGATAGGCGGTTTC 91462 33 97.0 36 .............................T... ACTACCTGTGAGTTGTTTCAGGACGGCCCGGCATTT 91393 33 84.8 0 .........TG..A........C..G....... | ========== ====== ====== ====== ================================= ==================================== ================== 13 33 97.2 35 GTCGCTCCCCACACGGGGAGCGTGGATTGAAAT # Left flank : ATGTCGCAGGCGACAAAAGAACTCAAACAGATCGACCGGCAAGAGGCGCTTGCTCAAAGCGAGCTGAACAAGCTAGAAGCCGTATCCAAAGGCGCGGGGAGCATGTTCCGGCAAATGGCCGCGCGGCAAGCGATATGTCTGGCAACGGCTTTTCCATAGCATCAATAGGTTGATATGCCCCAGCACTTCCATTTCCATAAATGGGACGAAAGATGAGGATGGGGGCGCGCGTGAAACGTGCTGATTACGCCAGCGAGGCGGCCGCCCGCGGCGCACGGGGCCGCAGGCGCAAGCCTTTTGTATTTTAAGAGAACGCCGTGCAGTATTTTGCGACCCGCTGTAGGCCCTTGGGGTGCGAACCGCAAGCGCACAGACTTTTCCCGGCGGTTTCGCACCATATTTTCCACATGATTTAGAGAAACGGACCTTTTTTATGGTTGCACTCTCCATGAAAACGGGCTATATTGTAGATGAGCAGCGGCAAAATACAAGCTGTTGCT # Right flank : GCAAAGGAAATTCTGACGCTAATCACCGGCTGATGGGGCAAAGCAAAAAGACCGCGATCCGATTTGCCGGATCGCGGTCTTGCTTTAAAGACAGGGCCAGGAATGGCGGCCGCTATTGGGCGGGCCGGAAGGTCAGCCGCTCAAAACAGGCCTGCGCCTCCTCCTGGGAGTTTGGATTGGCCAGCAGAATACCGGTTTCGGAGCCGGAGATCAGGATCAGATGATCAAACTCGGCATCGCCATAGGCGTAAAAGGTATAACGGATGCCATTGCCCTTACCGCTATCCAGTATGGTGGCGGAGGGATCGGCCTGCACCGCCTGCAGGTATGCGTCGTATTCATCGGCAGTGATGATGGCGCCGCGGCTGAGCACATGGCCGTCCTTTTTGACAGAAAACGGGGGATCAGGCGAGAAGGTATAACCATCGGTGGTGTCCAGCTTGACCGCGACTGCGTCTCCGTTATCCAACTGATAAGTATAGGACACATAGGTGGAAAAG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACACGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 323687-324321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNOJ010000003.1 Clostridium sp. BSD2780061688b_171218_E8 NODE_3_length_413807_cov_66.5639, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 323687 33 100.0 34 ................................. TACATCCGGCTGCTGGCGAATATACACGATGTCC 323754 33 100.0 33 ................................. AGGTTTTTGGCCATATCGATATTGGCCTTGAGC 323820 33 100.0 35 ................................. TGCTTCGTCGAGTGCGGCCTCCTTTGCCTCAAGTT 323888 33 100.0 34 ................................. ATCCATGGCCTTTTCAATGCCTGTCTTGTAGATT 323955 33 100.0 33 ................................. TGGGCCGCACAGCGCCATCTAGCGAGGTGCAAC 324021 33 100.0 34 ................................. ATCTACAATCTGTTAAAACAGGATGGCATCCTGC 324088 33 100.0 34 ................................. ACTCAAAGAGACTTAGCCAGACGTATCGGGATGT 324155 33 100.0 33 ................................. ATTGCGGCTATCCCTCCATATATTGTTGTAGTT 324221 32 97.0 35 ...-............................. GTGGATTTTATGCCTCTCCAGGACAACAGCAAAAG 324288 33 87.9 0 ............G............A...GT.. | T [324319] ========== ====== ====== ====== ================================= =================================== ================== 10 33 98.5 34 GTCGCACCCCGCAAGGGGTGCGTGGGTTGAAAT # Left flank : GTTTATCCGCCATTTTTCTGGAAATGAGGACGTTGGTCTATGCTACTGCTGATTACCTATGATGTAGACACCACCACCGCAGCCGGGCGGAAAAGGTTGCGCAGCGTGGCCAAAGTATGTGTCAACTATGGCCAACGGGTACAGAATTCTGTTTTTGAATGCGCTGCTGACGCCGCGCAGGCCAAGATGATCAAGGCCAAATTATTAGCTTTGATCGACGAGGAGCAAGATAGCTTGCGGTTTTACAACCTGGGGGACCGCTACCAAAACCGCATTGAACACTATGGCGCTAAAGGCAGCTATGACCCAGAGGGACTGCTGATGGTTTAGTGCGAAAGTGAAGAGCACAGGCTTTTCCTGGGGGATTCGCACCAGTTTAAACGCCGATATCTGCTCTTTGATTGGAATTTAAGCAGATGCAGGGTACTGTCTGTATTCCGGTTGACGAGAATTTGTGCAAGATGACGAACTTTTGAATGATGTATTTGTGCACTTTTGCT # Right flank : TGCTACATTCGTCTCCTGAGATCTGACAGAACAGCGGCGATGTCCCGCTGGATGCAGATGGCGCGCTGCCCGAGCTGCGGCGGGGCATAGGCCTCGTGTACATTGATGCAGGCGTAGACCGCGCTGGGATGCTCCGCCGTAGCAACCCAAAAGGGGTACTTGATGATACCGGGCGTATTTGTGCCCACGCCCAACTCCAAATAAAGTACGCGCAGCCCTTCGTTGCGCTGAATGAACTCGGCATATCGCCGGGCAGCCCGATGCCAGCCGGCATCTTCCACAAACTTTTCGTCGCTGCGCAGGTTTACGGTCATCGGCCTCCCGCAAATCGGACAGTGAGGGATGAGCGCTGTGGGGATCTTCATTTCCTGCTGCGCTGCCAGCATTTGACGGATCTGAGCCTCGTTATCATAGGTCAGCGGCCGGCAGGGCTGGCTGCACTGGAAAAGGCCGTAGTCGCCTTGCGTATAGAATAGACGCTGCTTATCAAATCCCGCCTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCAAGGGGTGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 173272-173639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNOJ010000004.1 Clostridium sp. BSD2780061688b_171218_E8 NODE_4_length_341709_cov_59.9947, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 173272 33 100.0 36 ................................. TTGGCTTGGCCACCGCCAAAAGGAGACAAAAACGCG 173341 33 100.0 33 ................................. GGAAGAGCCCATATCTGAGATTATCCAGAATTA 173407 33 100.0 34 ................................. AAATTTATATGTTTGAACAATAAAACTATATCAC 173474 33 100.0 34 ................................. ATTATCGGTAACCTGACGAAGGAGCCTGATTCAA 173541 33 100.0 33 ................................. TGCCGGGCCACCGCGTAACCGTTCATCCGGCTG 173607 33 69.7 0 ...T...C.T..GG......G.AC.G.C..... | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 95.0 34 GTCGCTCTCCGCAAGGAGAGCGTGGATTGAAAT # Left flank : GGTGTATGAGTTCAAGTCTCATCGCCCGCACCATTACTTTCATGCGGTAGTAGCTCAATGGTAGAGTGCCACCTTGCCATGGTGGATGTTGCGAGTTCGAGTCTCGTCTACCGCTCCAATTTGCGGGTGTAGCTCAATGGTAGAGTTCCAGCCTTCCAAGCTGGCTGTGTGGGTTCGATTCCCATCACCCGCTCCACTATTAGCTTAAATACCCAATTGTGGACCGCTAGCTCAGTTGGTAGAGCACCTGACTCTTAATCAGGGTGTCCAGGGTTCGAGCCCCTGGCGGTCCACCAGCTAAAACCCCAGTAAACAGTAGTGTTTGCTGGGGTTTTGCTTTATGTTCCTTTGGTGCGAAACACAAGTGATCATAAATATGCGGGGTGTTTCGCACCGCATTTTTATCCTTTCACCCTATAAAAACGGTTGACTAATAGTTGCACGCTTTGAAAAAATAAGCTATATTGTAGATGTTAATTGTTTCGACACAATTTGTTGCG # Right flank : TTTTTAAAGTCCGCTAAAGGATGTGTTTTAGCTCACTAAGCTTGTATCTTTTAGCAGCTTTACATGAAAGCGGCCGCGCCTAAGCGCGGTCGCTTTTGTCGTATAGTCGTGGCACAGAAAAAATGCCATAAATCGCAAAGATTATTCATAACGCAAGGCTTAGCTCCCATACATTGGTCATAGGAAAAGGGGGTAGCTTTATGCGGATATGGATCTTGACAAAAAAGAATCTGGCGCGCGCCGGTGTTATCGCGCTAGTTGCACTGGTGGCGGTCGGCGCGCTGTATTGGGGAGGCGGGCAAGCTGCCAGCAGTGTATTTGGTACGGCTAAAAAAGAACTGCCCGTTTATTCAGTGGAGCAAAGCGAAAAGAAGATCGCCATTAGCTTTGACGCCGCCTGGGGCGACGAAAAGACCAGCGATATCCTTTCGATACTGGATGAATACCAGGCAAAATGCACTTTTTTTCTCGTAGGGTTTTGGGTAGATAAATATCCTGAA # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //