Array 1 110438-111654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMP010000006.1 Planktothrix agardhii 1809 1809_scaffold002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 110438 37 100.0 36 ..................................... CATAACTATTAACTATAGCAGTTTTTTCCTGTTCTT 110511 37 100.0 36 ..................................... CAAGTAATGTATCTGACCCCGTAGCGGTGCGTTTAA 110584 37 100.0 41 ..................................... TCTCTATAAGTAAGTTAGCTTTTCTAGTATTCTCAGGACTT 110662 37 100.0 39 ..................................... AGTTTGGGCGGTGTTTGTGAGGGTCAATCTCTACCCAGT 110738 37 100.0 35 ..................................... TGATTGACGAGAACCCCATTCAAAGAGACCCTCTC 110810 37 100.0 36 ..................................... CTAATTGTCCAGTAACAAATTGGTTTAATAGGACTC 110883 37 100.0 37 ..................................... TAGAGAATAGAAAAGGGATAAAGCAGTTTTTGAAGTT 110957 37 100.0 36 ..................................... GAAATCAGAGTATGGCGACAGTTTCCGGGCTTTCTA 111030 37 100.0 35 ..................................... CCAAGCACGTTAAGACCGCTTTGAAAAGTCTACAA 111102 37 100.0 36 ..................................... CATATTTGTTCCTGAGTATAATTTCAATGCTCCTGA 111175 37 100.0 40 ..................................... TTGTTAGGAAATTCTCTAAATACTTTTAGTTCGGCGATAT 111252 37 100.0 37 ..................................... ATGGCGGCGATCGCATTTTTAAGTCGGTTAAGGTCAA 111326 37 100.0 35 ..................................... AGTGAACCTAATGAATGCTTGGAAAATATAGTTAA 111398 37 100.0 37 ..................................... TTCCCCAGATAATTCGGGCAATAGTTCGGGCAATAGT 111472 37 100.0 37 ..................................... GTTGTTGAAAGATTTTATCGGAAGCATCAAGAACCAT 111546 37 100.0 35 ..................................... TCCAAAATAGATTTATGCTCCGAGACAATTGGAAC 111618 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 100.0 37 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AGGGAACATGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATAGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAGAAAAGACTAAATAAAACCCCGACTAGATTATGTTTAGTCGGGGTTTTATGATTTAGGGATTGTCAATCAAAAGCCCCCGATTCCCAATAATCCTTAGCCGCTTCCCACTGTTCAGACGTAGCCGCGCAGTGGACTTGATGCCCTGCGTCTGACAACTTTCCTTTGTGATGTTTGGCGATCGCACCCTCCAAAGATACACAGATTAATCGGTACAGAGGGATTGGGGATTGGTTTATTAGGATATCCAGGGATTGAATAACACCCAGACCAAAGCCCTGCGGATCATAAGTCACATGATTCTGTCTAGTTCCATCGGATTTGAAGTAACGGGCGTGAAGTAGTTGCTTTTCCATAATTTAATCAATGACTACAACTTGTGTTCGCCAGGCTTTTTAGTAAT # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCTCTGAACTCAAATAAAAAACCCCGCATCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 3655-2438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMP010000014.1 Planktothrix agardhii 1809 1809_contig009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3654 37 100.0 36 ..................................... CATAACTATTAACTATAGCAGTTTTTTCCTGTTCTT 3581 37 100.0 36 ..................................... CAAGTAATGTATCTGACCCCGTAGCGGTGCGTTTAA 3508 37 100.0 41 ..................................... TCTCTATAAGTAAGTTAGCTTTTCTAGTATTCTCAGGACTT 3430 37 100.0 39 ..................................... AGTTTGGGCGGTGTTTGTGAGGGTCAATCTCTACCCAGT 3354 37 100.0 35 ..................................... TGATTGACGAGAACCCCATTCAAAGAGACCCTCTC 3282 37 100.0 36 ..................................... CTAATTGTCCAGTAACAAATTGGTTTAATAGGACTC 3209 37 100.0 37 ..................................... TAGAGAATAGAAAAGGGATAAAGCAGTTTTTGAAGTT 3135 37 100.0 36 ..................................... GAAATCAGAGTATGGCGACAGTTTCCGGGCTTTCTA 3062 37 100.0 35 ..................................... CCAAGCACGTTAAGACCGCTTTGAAAAGTCTACAA 2990 37 100.0 36 ..................................... CATATTTGTTCCTGAGTATAATTTCAATGCTCCTGA 2917 37 100.0 40 ..................................... TTGTTAGGAAATTCTCTAAATACTTTTAGTTCGGCGATAT 2840 37 100.0 37 ..................................... ATGGCGGCGATCGCATTTTTAAGTCGGTTAAGGTCAA 2766 37 100.0 35 ..................................... AGTGAACCTAATGAATGCTTGGAAAATATAGTTAA 2694 37 100.0 37 ..................................... TTCCCCAGATAATTCGGGCAATAGTTCGGGCAATAGT 2620 37 100.0 37 ..................................... GTTGTTGAAAGATTTTATCGGAAGCATCAAGAACCAT 2546 37 100.0 35 ..................................... TCCAAAATAGATTTATGCTCCGAGACAATTGGAAC 2474 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 100.0 37 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AGGGAACATGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATAGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAGAAAAGACTAAATAAAACCCCGACTAGATTATGTTTAGTCGGGGTTTTATGATTTAGGGATTGTCAATCAAAAGCCCCCGATTCCCAATAATCCTTAGCCGCTTCCCACTGTTCAGACGTAGCCGCGCAGTGGACTTGATGCCCTGCGTCTGACAACTTTCCTTTGTGATGTTTGGCGATCGCACCCTCCAAAGATACACAGATTAATCGGTACAGAGGGATTGGGGATTGGTTTATTAGGATATCCAGGGATTGAATAACACCCAGACCAAAGCCCTGCGGATCATAAGTCACATGATTCTGTCTAGTTCCATCGGATTTGAAGTAACGGGCGTGAAGTAGTTGCTTTTCCATAATTTAATCAATGACTACAACTTGTGTTCGCCAGGCTTTTTAGTAAT # Right flank : TCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCTCTGAACTCAAATAAAAAACCCCGCATCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 1710410-1709047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMP010000001.1 Planktothrix agardhii 1809 1809_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1710409 36 100.0 47 .................................... GTCCTGTAATTCCGAACGCATCTGAAGGGCTTTATTGAGAATATCGA 1710326 36 100.0 43 .................................... TTGTGACGTCTATTTTGCAGTCAACAATATTTTGGCCTTCTTT 1710247 36 100.0 36 .................................... AGATTTAGGAATTCACCAAAGGTTAATCCAGTCATT 1710175 36 100.0 44 .................................... TGGCAGCGTTGTATGTCCAACATTAGTTAAAATATTATTTTCAA 1710095 36 100.0 34 .................................... ATCAGGCTGGCAATTTTTTTCATTTCATTATTTA 1710025 36 100.0 36 .................................... AGGAGCGACGGGGGCAGTGTGTAGGATTTCTAATGG 1709953 36 100.0 40 .................................... AAAACCGCCAATGAAACAGCGATGACTTTTAATGCAAAAT 1709877 36 100.0 43 .................................... GATTGATATAGCGGGTTTTTAGTCCCGAAGGCTTTGGTCACGG 1709798 36 100.0 44 .................................... ATCCAGTGGCAACTGTTGAAGGATTGACTTGATTGCAGCGTCCC 1709718 36 100.0 42 .................................... TTTTGACATCCTGGAAAGTGAGTATTTTAAGAGTTCACCAAG 1709640 36 100.0 40 .................................... TACAAATATCCAGGTTGTTAACACAGTCTCCACTTTTACT 1709564 36 100.0 46 .................................... TCCCATAATTATCAACAACCGATAGATGGATAGCATTTATACGAAA 1709482 36 100.0 41 .................................... ATAGGGTCTGCGCTCCATGCGTTCGGTCTTGTTCGCATTTC 1709405 36 100.0 42 .................................... CTTGGTAGACAAAGAGATTGTTTTTGCTCCGCCACACAAGAA TAAAGGGAT [1709385] 1709318 36 100.0 44 .................................... AACGAAATCAAGAAAAAAGCCCAAAAATTAAAAGCTGAAAACGA 1709238 36 100.0 45 .................................... TTAAAAGTAATGACCGCATAGGAGGTAAAAACATAGCAGTTCCCT 1709157 36 100.0 39 .................................... AGAAAATGTTTTTTTATCTATCGTAAATGTTTTGCAATA 1709082 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== =============================================== ================== 18 36 99.8 42 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TGAAGGATACAAACCTTATGAAATTCGCTGATGTTATTTTACATTGTCGCTTATGATATTCCCTGTGATAAACGTCGTCGTAAAGTGGCAGAATTATTAGAAGGATATGGAAGGCGAGTTCAATATTCGGTGTTTGAATGTGTTTTGGCTCAGTCAAAATATATTGAGTTACAAAAACGCTTAAAGAAACAAGTAAATTTGGCTGAGGATAACCTGAGATTTTATCCGCTTTCTCGCCATACTTGGGGAAGTGTAGAAATTTGGGGTCAGGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATGTTTTTTGCGAAGCTGAAGCTTGAATGCCTATGATATCGATTCTGCTGTTTATAGCCTCGCCTACCCTTCCTGTAAGGGTTCTGAGATTTTGATTCAGGAGTAAAATGTTGTTTCAGCCAACTGTTTTTATCAGTCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : GCTAAGACAAAATTAGTGGAAGTTTTCTATTAATATGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGAGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAGGCAATTCCCCGGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTGGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTTAACTTTTGAAAAACTCTAAAGACCCTTTTAAAACTCAGATAAACTTAATTTCCCTACTCGCTAGGGAAATTAATTGATTCCGATCTCACTAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGAACAGAATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 3425178-3424994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMP010000001.1 Planktothrix agardhii 1809 1809_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 3425177 38 94.7 34 G...................A................. TAAAGAGTCTGTGACGTACTAGAGGTTCCATTTA 3425105 38 100.0 36 ...................................... GGTGTCCAGTTTTTCTGTCCAAGTACCGTCACTTCG 3425031 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 98.2 36 CGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AATGTTAAACTGCTACCTTCTCTTTCTTAACGTTAGAGGTCTTTAACCTCTTAGAAATCGCAACAACTACATCAGCTAATTCCGTGCTAATCTTAGCAACTTCTGAATCTGAAAGTCTACCAGAGTCAATCATTAGAGCGATATCAGCTAAAGGCAATTGCTCAGTTTTAATACTTGACTGAGAAATCCGACGAGCAAAGTCTTTTTTAAAACCCGGCGCTAGTTGCTCACACATTTCTAGTATTTCACCGAATCTCGATAGAGGGATTCCGCATTTTCCTAATTTGACTTCTGAAATATAGGTTGAACTATTGCCAGCTTTAGCCGCCAAGTCTTTACCGCGAACATTAAGATCGTCCAGAGTTTCACCAAAAATTTTATGCAAGTCCATTTGTAATAATCCTTAATGTTTTTTTACTAATTATATACAATTAATGGCTTTATTATAGTATAATAGAGCCATTAAGCAAAGGAAAATATTTTTTTCTATGAACATTCTA # Right flank : TCTGCCGTCTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCACAAATATAAACTATTGATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACGATAGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAGCTGCTCACCGTTGGGGTAATTTCTGCTAAGGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAGGCTTGGGTTTGAGGCACTAACTGTA # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA //