Array 1 424530-426021 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLN01000001.1 Salmonella sp. S065_01391 NODE_1_length_635285_cov_210.614, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 424530 29 100.0 32 ............................. TTAGTCGCACCACCGGAACCTACCTGCGCCTC 424591 29 100.0 32 ............................. TTGTCATGCGGCGCTGCGAGCGTGCGGCCTTT 424652 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCGCACGCCCTTA 424713 29 100.0 32 ............................. GGCTAGCCTACCCTTTAAGGGGTTCCACAACG 424774 29 100.0 32 ............................. GCTGCCAGCACTACTACCCGCCGTCGTTCCGC 424835 29 100.0 32 ............................. CGTTTATGGCCGGTGCAAAATTTGGTGCTAAT 424896 29 100.0 32 ............................. CGCCGCGAGGTGATCGAGATGCTTGAGGGTAT 424957 29 100.0 32 ............................. GTATCTCGAAGAGCGTCAAAAAAGCCGGAATG 425018 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 425079 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 425140 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 425201 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 425262 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 425323 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 425384 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 425445 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 425506 29 96.6 32 .............T............... GATTGTTCAGATTGGGAATTTGACCAACGCCC 425567 29 96.6 32 .............T............... GTTACTGTATTATCTCTCGCATAGACCCGGCA 425628 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 425689 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 425750 29 96.6 32 .............T............... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 425811 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 425872 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 425933 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 425994 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTAGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 442145-442662 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLN01000001.1 Salmonella sp. S065_01391 NODE_1_length_635285_cov_210.614, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 442145 29 100.0 32 ............................. GCGGGACCTCCAGCGCCACTGCTAATATTCGT 442206 29 96.6 32 ............................T GTCCCGTACGAGATACTCCAGCGCCTGCCCGC 442267 29 100.0 32 ............................. GAGTAATGGATGCCCTGCCCGGCGATTGGATT 442328 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 442389 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 442450 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 442511 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 442572 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 442633 29 93.1 0 A...........T................ | A [442659] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //