Array 1 76696-76547 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRML01000005.1 Cronobacter sakazakii strain cro2802A1 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76695 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 76635 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76574 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 147382-150277 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRML01000008.1 Cronobacter sakazakii strain cro2802A1 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 147382 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 147443 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 147504 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 147565 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 147626 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 147687 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 147748 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 147809 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 147870 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 147931 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 147992 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 148053 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 148114 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 148175 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 148236 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 148297 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 148358 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 148419 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 148480 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 148541 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 148602 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 148663 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 148724 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 148785 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 148846 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 148907 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 148968 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 149029 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 149090 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 149151 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 149212 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 149273 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 149334 29 100.0 32 ............................. TTCGACGATCTCCACGTCGGCGTGAATGTTCG 149395 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 149456 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 149517 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 149578 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 149639 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 149700 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 149761 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 149822 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 149883 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 149944 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 150005 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 150066 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 150127 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 150188 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 150249 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 200926-199798 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRML01000007.1 Cronobacter sakazakii strain cro2802A1 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 200925 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 200864 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 200803 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 200742 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 200681 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 200620 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 200559 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 200498 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 200437 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 200376 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 200315 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 200254 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 200193 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 200132 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 200071 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 200010 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 199948 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 199887 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 199826 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //