Array 1 40310-39730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHU01000046.1 Streptomyces sp. NRRL S-1314 contig46.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 40309 33 93.9 28 .............................TT.. TCTCCACCACCAGGCCGTCGGCCCCGAG 40248 33 90.9 28 .............................TTG. CGAACCCTGGCCATGACAGCCGGCCCGA 40187 33 97.0 27 ...............................T. GCGGTTCACCGAGACCGGCCGACCGGT G [40159] 40126 33 93.9 28 ..............................A.T ACAGGGTCGGCCCCAGCGAGCAGTGGTC 40065 33 87.9 28 .............................GCTC TGGAGTCAGAAGGGCTGGTGAGGAGCGT 40004 33 100.0 28 ................................. ACGTGCTGCGCGCCACCGTCCGCCCCCG 39943 33 90.9 28 .............................AAG. TGGCCGCCGCCTGGCGTCGTGCGTTCAC 39882 33 90.9 28 ..............................CTT CCACGAGCAGCGCCTGCGGAACCTCGTG 39821 33 87.9 24 .......................TCC...T... GGAGTTGGCGGAGGAGACGGGTTG AG [39794] 39762 33 90.9 0 .............................GT.A | ========== ====== ====== ====== ================================= ============================ ================== 10 33 92.4 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGCG # Left flank : GGAGGCATTCTCCCTGTGGATCGAAGCAGATGAGACCGTGTTCACGAGCCAGAGCAGCGGCGTAGTCGGACACTTCCTCAGCCTTGCCATAGGACATGACCAGGTACACGATCGGCCCTGATGCTTCGTCGATGACCGGCGTCGACGCCCATACGGTGCTGCCGTCGACATCGTCGGGGTATCGGGCAACGAGCGCATCCACGTAGGCCGCGATGCTGGGTGCAGGCGGGACGACTACGTCGTCCGGCTCCAGGTAGCGCTCATAGAGCTCGTCGTAGATCGAGCCTGCTCGGTGGTCGTCAGGTGGGCATTCCCCGTCCCACACAGCAAGGTCATAGCTCACAACCACATGCTCGCAGGTAGCAGCCTCTCCGGAGTCAGCAGGGCTCTGTAATCGGCCCAACCCCCAGGCCATCCGTGAGGGCTTCTAGGTGAGCACGTTCGTCCGTACTTGGCTGAGCACATTGATGGGTACGCCGACACCTGGCCCAGCTCCGCCC # Right flank : GATGGTTCCGCGTTCGATGACCTGCCGCCCGACCTTGATCGCCTGCACACCCTGCGGGTGTGGCACGTCATGTGGCTGCAGCGCATCGACGCCAAGATCGCCGCCCTCGCCAGACGGCAGACCGAAGAGGGACGCGGCCGCCGCAACCGGTCCGCACCGCCGGAGTGGATCATCGAACTCGGCATCGGCGAGCGGCGCCCACCCCTGCAGATCCATACAGGCGACTGCCACATGGCCGGCAAACGACACCGCCCTGTCGACCGGGTCGAAGCCCGCCGCCTCCTCGCCACGGGACTCAAAGCATGCGGCCATTGCCGGCCCGACAGCCTGCTCGGCATCACCGAGTTATCGAGCAACCCAGCCTCACTGCCGCCGCTGCACGCCAATCACACTCGCACCATCCGGTCCATTTTATACTTCCGGGGCGATATGCACCTATCGCCCCGGAACGGGGCCCGTCACGACGGGCCCTGTTCCCGCTGGTCGGCGGGTGGGAGCTG # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:-0.05, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3842-4358 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHU01000063.1 Streptomyces sp. NRRL S-1314 contig63.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3842 29 100.0 32 ............................. CCGCGCACGTCGATGAGCGGTCCGAGGTGGGG 3903 29 100.0 32 ............................. CACCGGGATACCGCTCGCGAGCGCCTCCACGC 3964 29 100.0 32 ............................. CAGGGAGGGGGCGTTCGTCGTGTCCGGGGGCT 4025 29 100.0 32 ............................. CGCAAGGCACTCGCCGCCCGCCGCGAGGTCTT 4086 29 100.0 32 ............................. TCCAGGTTCCGGTCGTGCAGGCGCCGGTTCGC 4147 29 100.0 32 ............................. CGGCTCACGGTCTTGTCCCGCGGCTTCATGAC 4208 29 93.1 32 .................A.....A..... GGCTGGACCATCGGACACCGTCCGGCCCACCT 4269 29 96.6 32 .................A........... TCGCCGACCGTCTTGTCCCGGGCCTTCATGAC 4330 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CCGCTCAGAAAGCAGAAGCAGGACAGTAAGGCAGTTCACCGGGCAAGGGCGGTCTCGTGACCGGTGCCGGCAGCGGCATGGGCGCGGCGACGGCACGGCTGCTCACCGTCCGCAGCGCCGCCGTCACCGTGGTCGGCCGTCGCGCCGACAAGCTCCACGCGGTCGTCGCGCAGATCCCTGCTCGTCGACCGAGCGGGCCCACGCTCCCGCACGGCACACGGTCTGCGGAACGTGCCACCGGTACGCCGTCCCCGGTTCGACGGGGATGTGGACGAGGGAGTGCTTGATACAGCAGAGAACCGGTCCAGCAGGAAGCCCTCGCTCGCGCTCCATGCGAAGTTGCCTGAGTTCGTCCTGCTCGGCGGAGGTCAGCCGGCCGCCGCGTTCGCCCCGGTCGGCCTCGGACTGGCGGACCCATCCCCGCGGGTGCGGGGAGCAGAGTCGGACCCAGCCGGGGCCGGTGGGGTCCTCGGGACCATAGGTCCCTTGTCGGTGCGAGA # Right flank : CGCCGTCTCCCGCCCTCCCAGTGAGCAACAGTGAGCTTTCGCCAACTTGAAGCCGCAGCTCCCAGGGCTGATGTGGCGGTGTTCGGTGTGCTCATGCTGGTCGAGGGCGGCAGTCTGCGGAGCAGGTCATCGGGCGGAGCGGTGGGCCCGCCGGTTCCTGCCTGTTGTAACCGGGTGGGTCTTCTACGGTCCGGTCTGCTCGGGGTCAGTCGGCATGGGGGTGGCCCGGAGCCGCTTCAGCTGCCTTCGCCGTCTTGGTTTCACCCGACGTCGAAAGTCCCTGGTTCTCGTGGAGGCCAGGGGACACCTACAAGGGCGACGGGACAGGGCGAGTGGTGTAGTACGGCGTGGTGGGTGGGTCTGAGTTCGCGGCGCACCATGCCGTGCCGGTGGTGGACTCCGAGAACGAGGAGGTCGGCCTGGTGCGCGGCTTGGGTCAGGACGTGGTGCGCGGGGCCGTCTAGGACTTGTCTGTGCACGGTGACGCCGTTTTCGAGGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCACCCGCAGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 69275-70904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHU01000052.1 Streptomyces sp. NRRL S-1314 contig52.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 69275 29 86.2 31 ................T....G..C...G TGGGCCGGTACCGACTCCAGGCCAACCAGCA A [69298] 69336 29 75.9 31 G..G.T...............TA.C...T GCGTGATTAACTCAGGGTGGCCATGCTGTCC 69396 29 72.4 31 G.CG.T........T......G..C..G. GTAAGCGGCTCCGGCGTCTCCGCGGTGCTCC A,A [69412,69419] 69458 29 82.8 32 G.CG.A........T.............. GCCATATGCAGCGCGAGCGCCTCGGCGCACTT 69519 29 89.7 32 ...........G.........G......A AGGTATGTGTACGTGTGTTCTGGCTGCTGCTC 69580 29 82.8 36 ..........T...T...........TGG TCCCTTCGCTCAGTTGCTGCGCGACGACTTCTCCGG 69645 29 93.1 32 ...........G.........G....... TCCCTGAAGTCGACGAACGCGAGCGCGGTCGG 69706 29 79.3 32 .....T.......T.....CA...AC... GTCGAAAAGGGTGGCCGGGTCCTCGAGGTCCT 69767 28 79.3 33 .C....T...A..TA......-....... GGTTCGCCACAAAGGTCGACCGCAACGGGCTCC 69828 29 93.1 32 TG........................... GACACGGACGGCGACGGCGAGGCGGACACCAC 69889 29 96.6 32 .................A........... CATGACGGCTGGGTCGACGGGAAGAAGGGCAA 69950 29 93.1 32 ..T..............A........... CGGGACACGTAGGTGGGTCCCTCGCTGGTGTC 70011 29 93.1 42 ........T.........A.......... TCCGCGAGCGTCAGGGGGCGAGGATTGGCGTCCTGCTCCCGC 70082 28 82.8 29 ACC.G............-........... TGCTCCGGCGGGTTGCTGAACCCGCAGAT A [70088] 70140 29 96.6 32 ......T...................... ACCGCGGCGCACGGCACCCCCCGCTACGGCGG G [70145] 70202 29 93.1 32 ....C.........T.............. GTCAGGAGCTGCTTCCTGATCGCGCCGTTCAG 70263 29 86.2 36 ....A...A...T....A........... CCGCTCCAGTTGTCGAAGACGATGCATGCGAGCCCG 70328 29 93.1 31 .............T..............G CCCTGCGTCGCGCGACCGTCGGCCGGATCTA 70388 29 100.0 32 ............................. CCGGCCAAGGACCACCCGAAGAGCCAGCAGCA 70449 29 100.0 33 ............................. TGGGAGCGCGTACCGCCGGGCCAGGGCTCGTTG 70511 29 96.6 32 ..........T.................. TCTGCGCTGGCTGCGCGACCCACGAGTGCTAC 70572 29 100.0 32 ............................. ATCGGCGAAACCCTCGGCTACGAGCTGATCAA 70633 29 100.0 32 ............................. CGTACCCAGGCGGAGCAGAAAGCGGCGGCGCC 70694 29 100.0 32 ............................. CGGTCGAACTCGGACGAGGCAGACTTCACCAG 70755 29 93.1 32 ...........G......A.......... CGAGCGAGGACGGCGACGCCGGCGGTGCAGCC 70816 29 96.6 32 ................T............ GTGACCGGCATCAACAAGGGCTCGGTCAGCAA 70877 28 86.2 0 ......T....-.....A.....C..... | ========== ====== ====== ====== ============================= ========================================== ================== 27 29 90.4 33 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CCCCATCCGCAACCCTCGCCACCGCGCTCCCGGACCGCTTTCAGCAGTCGGCCGAACTGATCCATCCGCAGACCGGTGAACGTCTCCACCCACACCCGCTCGGCCCTCAACACCCCAACCATGCATGGGAGATGTCCAGTTCACGGCCTTCTGCAACACCCTTTAGGGTCTGTTGTCAAATGATCTTCGGTAGAAGATCATGGTGGGGTGATACGTCGCCATGAACTGTCGGTTTCCGAGGGGGAATTCGTCCAGCCACTACTGCCCGAGTCGCTGCGAAGCAGGAAGCGGTTGGACGACCGTACGGTGCTCAACGGGATCGTGTGGACGTTCCGTACCGGGACCGCTTGGCGGGACGTGCCCGAGCGGCACGGTTCCTGGGCCACGCTGCACACCCGCTTCCGCCGGTGGGCCAACGATGGCACCTTCGAGCGCATGCACCGGGCCGCTCAGGCCAAGGCCGACGCAGCCGGGGACATCGAGTGGCTCGTGTAGGCGTC # Right flank : CAGGGTGGGGCGGGGCATGGACACAGCCCTCCTGTCCAGGCGTGTCGGCGGTCACGCAATTCCCCACGATCTGCATGATCAGCGTCACGTAATTCCCCACCCCTGTGGTCACGACTCCCCACCGGGGCGGTGACCATCAGTGGTGCCGGTGACCGTGCTCGAGCTGGCACGATGTTCCCTGTTTCGTGTGGTTTGAGTAGTTGATAGCTATTCCTTGAGAATTGTTCGGGTTCCCCATGGGCATGCCGGTGCCGGGTTGAGGGTCCGGCCTCTCGGAGCCGTCGCGGTCCCTCGATCTGCGAGCCGAGAGGCCGACGGACGCACCGGATGGCAAGGAGAACGTTCACCGTGGTCGACATCGTCGAGATCTACGTGCACTGGTACGCGGGCCGGTCCAAGAGCCAGGTGTCCGCCTCGCTGGGGGTGGACCGCAAGACGATCAGGAAGTACCTGGCGCCGGCGGAGGTGGCGGGGATCGCCCCGGGCGGGCCGCCCATGGG # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [40-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 77685-79061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHU01000052.1 Streptomyces sp. NRRL S-1314 contig52.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 77685 28 93.1 32 .......T........-............ GTCCTCTACCCGATCGGGGACTTCTTCACGAA 77745 29 89.7 31 ...T..................G..C... CGCTCCAGTCGTCGAAGACGATGCCGGCCCG 77805 28 82.8 32 .....-.......ATC........C.... GAGCTCAAGCGTTGGGAGAAGAAGGCCGAACG 77865 27 89.7 32 ............-.T.-............ GGGAAGCGGGCACCGTACTTGTTGACGAAGTA 77924 29 96.6 32 .............T............... GACGTCGTTTTCATCGAGACCACTCAGGTGTT 77985 29 100.0 32 ............................. GACAACCCCCGTCAGCTCACCGGCGGCCGGTG 78046 29 89.7 32 ..............T..T.A......... TCGACGGCCAGGACGTCGCCGGTGTCCGCGTC 78107 29 96.6 32 .............T............... TTCGTCGTCGACCAGGCTGGCAACATCTACGA 78168 29 89.7 33 ...T..........T.............T CCGGCCAGCTTCCCGCGCGATCAGCGTGATCCC 78230 29 96.6 32 ...........T................. ACGACGTCTTCCCAGACCTCGGCCAGGTCGCC 78291 29 93.1 32 .......T...T................. GAGGCGACGCCGATGCGGATCCGGCAAGGCGT 78352 29 100.0 32 ............................. TTCACGAACGCCTCCGCGTCACCCAGCACGAA 78413 29 100.0 32 ............................. TCGTACGGGGTGAGCGCCTGCGTCGCCGTGCT 78474 29 100.0 32 ............................. AACCTCGTTCCGTTCGCCGACCGGTGACCGCC 78535 29 100.0 32 ............................. GACTCCTACCGCGCCGCCTACTACGGCTCGGT 78596 29 93.1 32 ....................A.......T GCCGACACCGACGCCGTCACCATCATCGGCGC 78657 29 100.0 32 ............................. TCGACTGTCGGGGGCGCCGTCGCGGACGCAGC 78718 29 100.0 42 ............................. ACGGGCGCCGTGCAGGAGTCGCTCAACGACCGAGGCGAGTGG 78789 29 100.0 32 ............................. TTACCTGGGAGTAAGGTGCCCTAATCCGATGA 78850 29 100.0 32 ............................. GCCAACCGCACCTTCACGACCGCGGTCCCCTG 78911 29 96.6 32 ................G............ AGCACCGCGACGCCGGCCATGCCGACCGCGAC T [78927] 78973 28 96.6 32 .............-............... GCCCCGAAGTCCGAGTGGGTCGTCTACGTGGC 79033 29 96.6 0 .....G....................... | ========== ====== ====== ====== ============================= ========================================== ================== 23 29 95.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : AGCGCGGACAGGCGGGCGGCAGACCGCCGACCTTCGACCGCGAGGCATACAAGCAGCGCAACACCGTCGAGCGGTGCATCAACCGCCTGAAGCAGTGGCGCGGCATCGCCACCCGCTACGAGAAGACCGCGACCATCTACCTCGCCGGACTTCACATCGCCGGCATCTTCCTCTGGTCCGCCCGCTGATCCAAACGAAACCGCCTAGCGAAGACCGAGACCTGGGCCCACACGATCCGACTGCTTCCCAAGCTTGCCCCTGAGGCTGGGGCGCCTGAGCCTGATCATGGGGAACGTGGCCCGCGGATGGACCGGAAGCCGGAGGCCTCATCCCAGTCATGAACGCACCGGCGACCGATAGAGGTGTCAGCAATGATCGAATCATGTTTTGTGCGCCACACCCACGGGGGACAGCCCCGACGGCCTGGTCGCTGTGGTGCCGCTTGAACTATCGGGCGGCCTTCTTATACTTCCTGCCAGTTCCCTGCCCTGCGGGCGCTC # Right flank : CTCCGCGCCCAGGGCGGCGGCAGCCTCTTCAGGGGCAGACCGGCTCGTCGTCGTCCGGGTTGTGCGGGTCGGGACCATCTCCGCGGCTGCGGGGAGCAGCGGACGATGGCTGTCGTCGTGGTCTTGTCAGAGGGACCCTCCCCGCGGGTGGGGAGGGGAGGCGCAGGCCCCTTAGCGCGCCTCCTAAGCCCGCTTCAGGCAGGTGGCGGGCACCTGACCGCCGCGGACGATCCTCCAGACATGCCCGTCGCGGCCGCACTTCCGGTATGCCGGGCCACTCTGCGTGCGGGCGATCGCCTCCACGCACGACGTCACCACATCACCCTGCCTGGTACAGGTAGCGCACGACCGGCGAGTCGGGTGAGGCGACCGGAGCGTTGTCTGCTGGCCTGCGCACCGCGACTTTCTTGCCGGTGACCACCCACTTTGCCGAGCAGGCGCTCGGCGAGGAGAGGTTGGCAGGCGTCGCGGCCGCAGGAGAAGCTGTGGCCGGCAGCAGT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 106455-101055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHU01000052.1 Streptomyces sp. NRRL S-1314 contig52.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106454 29 100.0 32 ............................. TCCCGGAGGCCGACCCCGTTCCCGTCGGCCTG 106393 29 100.0 32 ............................. GTTCGAGACTCGAGCTTCTACCCGGCCGCGCC 106332 29 100.0 32 ............................. CCGCGCAGGTCAGAGCACTGCGGCGGCCCTGG 106271 29 100.0 32 ............................. TCCCCGAACAGGGCTCCCTCCCGGGACAGTGG 106210 29 100.0 32 ............................. CTTGACGACTCGTCCGAAGGTACATGTAAGAC 106149 29 96.6 32 ............................G GTGACCAGGTAGGCGATCCCGCCCCGGCGGAT 106088 29 100.0 32 ............................. TCGACGCCACCGCCGACGAGCGAGAGCCCACC 106027 29 96.6 32 ............................T GGTTGACGGTCAGTGAGGTCGCTCGGCACTTC 105966 29 100.0 32 ............................. TTTGAGCGTGCGGTTCGTTCGTGGCGGTCCGC 105905 29 96.6 32 ............................G CGGAGATGTACCGCTTCATCCAAGGAGCCCGC 105844 29 100.0 32 ............................. ACCAAGCCCACCCAGTAGAACGCGCCGGCCGC 105783 29 100.0 32 ............................. CACCGCCACGAGCGGCGCTGCAGGGTGCCGTC 105722 29 100.0 32 ............................. CGGGTCCGGACGAGGACAAGAACCCGTCGGTG 105661 29 100.0 32 ............................. ATGCCGCAGCCGAGGATGGCGATGGGCTTGGG 105600 29 100.0 32 ............................. TCGGCCCGCTCGTCCGCCTGGCCCTCATCGAT 105539 29 96.6 32 ............................T ACCAGGTCGACGGCTACCTCTCCGGTGCCCTG 105478 29 96.6 32 ............................A ATGCGCTGTAGTCCCTGGGGGTCGGCCCCGTA 105417 29 100.0 32 ............................. CTCCACGGGGAGCGGCCGTACTGCCTATCCAC 105356 29 100.0 32 ............................. GAGGGCGGCGACCTCGAGCCGGGACTCCTCCG 105295 29 96.6 32 ............................G ATGACCCCGCAGTGCGAGGTGAGGTACCAGAG 105234 29 100.0 32 ............................. CGTTCAGTCCGACCCTCACGTTGTCGGCGTCG 105173 29 93.1 32 .............G..............G GGACGGCGCACGTGATGGCCGCGCGCACGCCC 105112 29 100.0 32 ............................. CTGACCACCGCCGAGCTGTTCACCACCTCCCT 105051 29 96.6 33 ............................G ACCCCGGTCAGGAGCGAGGAGCACCCGCAGGAC 104989 29 100.0 32 ............................. AGATCCTCCTCGATCGAGGAGGCGGACAGGCC 104928 29 100.0 32 ............................. TCTGTTGTTTCATTCCCAAGGCGTCCGGTTTT 104867 29 96.6 32 ............................G TCCTGCGCGGTGATCCGCTCGCGGTCTCTCGC 104806 29 96.6 32 ............................T TCGTCTGCCACCTCGGCGGGATGCTCCAGCGG 104745 29 100.0 32 ............................. TTGATGCCCTCGTCGACGATCCGACCGGCCAT 104684 29 100.0 32 ............................. TCCCCGGGGTGGCGGAGCTGCTGGCGCAGACC 104623 29 96.6 32 ............................G CCACCTGACCGGCGACCGGCCCCCACGGCCGC 104562 29 96.6 33 ............................G ATGACGGACACGGAGTACTCGAAGGCCCGCCGG 104500 29 100.0 32 ............................. CCGGCGTAGCCGACCGACCGCGGTGAGGGGCC 104439 29 96.6 32 ............................A CGCCGTGAGAGCCCTTGTGGCGTCCTGGGGGC 104378 29 100.0 32 ............................. GTCGGCCGCATCGACCGCATCTGGCGCGAGGA 104317 29 100.0 32 ............................. CGGGCCAAGTGCCCGTCGTGCTCGTCGCGCAG 104256 29 100.0 32 ............................. TCCAACGCGGAAATGGGCCGGGTCGTGGCCGC 104195 29 100.0 32 ............................. CGTCTGCCCCGGCAGTGGTATCAGAAACTGGT 104134 29 96.6 32 ............................G ACATCGCGCCCGGCATCGTCGTCCCCTACGAG 104073 29 100.0 32 ............................. GTTGAGGTCCTCGACCACGTGGACGGGGCGGA 104012 29 96.6 32 ............A................ GTGTTGACGCCGGGGGTCAGGTCGGTCAGCAG 103951 29 96.6 32 ............................G CCCGGCGCGACCGTGGGCCAGCTCGCGCCGGC 103890 29 96.6 32 ............................G GGGCGTCCCACCGTCGGAGTCTGCGGAGCGCG 103829 29 100.0 32 ............................. ACCGCACCGACAAGACGCCCACCCTGTCGGAC 103768 29 96.6 32 ............................G TCGGAGCGCGGCGACGCCGACGAGCCGGGCCC 103707 29 100.0 32 ............................. CCCGTCGTCGACCGGATCTTCAACCGGACCGC 103646 29 100.0 32 ............................. AGGTTCCCGACGAGCAGATCCTCGACCTCGGC 103585 29 96.6 33 ............................T TCGTGCCGCCGCCTCCGCCGTGGCTGGCGGGAC 103523 29 96.6 32 ............................G ACGGCGTCATCCGCGTCGCCCTCGCCGCCGCC 103462 29 100.0 32 ............................. GGCGGATGCCGCCCACCCGGTGAGGGTGGACG 103401 29 96.6 32 ............................T CCGTGGCTGACCGAGTTGGGCGAGTCGGTGCA 103340 29 96.6 32 ............................G CCGCAGGCGTGAGCGTCCCCGAGTACGTGCGC 103279 29 100.0 32 ............................. GGGGACGACGTCGTCGCTGTAGCCGGGCCAGT 103218 29 100.0 33 ............................. CCATCACCGAGCCCGGCATCTACGACATGCCGA 103156 29 100.0 32 ............................. TCGTCCACGTACACCGACCTCGCCACGCCCGG 103095 29 100.0 32 ............................. GCCCTGGTCGGGCCGAGCGGAGCCGGGAAGTC 103034 29 100.0 32 ............................. CCGGGGTAGGACAGCAGCGACGTGATGACGAG 102973 29 100.0 32 ............................. CGAGCGCGAGGTACACCAGCTTGCCGAGGTCC 102912 29 96.6 32 ............................G AGTGACGTCCTGGGCGGCCTCACCATCCGCTT 102851 29 96.6 32 ............................T GCGTGAGGACTCGCCGTCCTCCAAGGCGCTGC 102790 29 100.0 32 ............................. CACAGCTTCGGCGGAGCCTGCGCCCTCCGCGG 102729 29 100.0 32 ............................. GCCGAGGACTGCCCACTGTGTACGGACCCGAA 102668 29 93.1 32 .C..........................G CTGAGCACCATCGTGGGCAGCGCGGCCAGGTC 102607 29 100.0 32 ............................. CGTCGGGCCAGGGCGCGGACAAGTTCGTCGCC 102546 29 96.6 32 ............................G ACCGCCCCGTACGTGATCACCGTGATCGAGGT 102485 29 96.6 32 ............................A CGCGGGTGGGGCTTCTTCGTGTCCAGTTCGTA 102424 29 100.0 32 ............................. CGACGACGGCCCCCGACACCCCGTCACCCATC 102363 29 96.6 32 ............................A CAGACCGTCCCCACCACCTGACCCGGCCCACC 102302 29 96.6 32 ............................G ACCACGACGACGGGCCGCTGCATCATGGGCGT 102241 29 96.6 32 ............................A TCGGGGAACGGCAGAGGCCCGCGGCCGGGTGG 102180 29 100.0 32 ............................. CATGCCGGGCCGACGCTTGCGAGCATGGGCAC 102119 29 100.0 32 ............................. GTCCGGGCGGGGTTGGCGTACAGGTCCTCATC 102058 29 93.1 32 ..T.........................G TGCTTCGGCATGCCGCTGGCCGGGCGTAGCGT 101997 29 96.6 32 ............................G CGGGGCATGCAGCAGAAGCTGGTGAACTTCCT 101936 29 96.6 32 ................T............ TCCTCGTAGCGGTGCACGTGGTCGGTGCCGTT 101875 29 100.0 32 ............................. CGTGACGCCGACCAGGCCGCCGCCATCCTGGC 101814 29 100.0 32 ............................. GCGTCCTCGCCCACCGGCGGACCCGCATGGAC 101753 29 100.0 32 ............................. GAACGCCGGGTCGCGGCCGAGGTGATCGCCGA 101692 29 93.1 32 .................A..........G GTGCTGGGTACTGCGGATCTGGACGGTGGAGC 101631 29 96.6 32 ............................T CCGTCGGCGGCGAGCTGCGGCTCGACGGCCCA 101570 29 96.6 32 ............................G AAGGAGACCCCGGACAGCGGGGTCGTCCAGAA 101509 29 100.0 32 ............................. CCGATCCGCCGCCCCGCCCTCTGTGCCGTCGT 101448 29 100.0 32 ............................. ACTTCCTTCTCCAGCACCGCAAGGCGCGCGTC 101387 29 96.6 31 .....................A....... CCCCTGGGTTGTTCGGGGCGCTGTCCCCCGA 101327 29 96.6 32 ...................A......... TCCCGCTCCCGGACCGCCCGCCGGCCGGACCG 101266 29 96.6 32 ............................G CGGTCCGGATGGAGGTCCCCTACCGCCGGATC 101205 29 100.0 32 ............................. CTGGCACGCACCCTGCGCAGCCTGTCCGGGGA 101144 29 93.1 32 ...............A.....A....... CTCCGCGGCGTGGCATTCACCCGGGCCGCGCC 101083 29 93.1 0 .................A..C........ | ========== ====== ====== ====== ============================= ================================= ================== 89 29 98.2 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Left flank : GTCAGCCGGCAGCCGCCCCCACGTCAGCCCCGCCGCCAACACCGGCGCGGCCTCGGCCTCGTCCATGGCCTGAAACGCCGGGCACGCCTTCCCACAGTCATGGATGCCGCACACCCACATAAACCACAGCTGGCCCCGCCCCCCGCTGATCTCATCCAACCTCTGCCGGAACGCCCGCGACAGATACTGATCCCATATCAGCCCTGCCACCGCTGCCGTGTCCAGCAGATGCCCCAGCAACAGATGCCTCTGGCCGCCGTTCCTCGCCGCCGACTTCCCCCAAAGCCGCGATACCCGTTCTACAGTCTCCGGCGACAGCCCCATCGCCTCCATCAGCTGAACGACGGAACCCCCACGGTCCACCACGGAAACCACCGCCTCACTCAGATGCCCTGGCACACTAGGCCGTGCCACTGACAACGCCTCCGCCAGGGCACAGGAGCGGAATGCAGGCGAAGGAAAACCGACCCCCTTGCTAGCATCACTGCAGGTCACGAAGT # Right flank : GGCGGAGGCGGCGGGGGTGGGCAGCAGCGAAGAGGTCCTTGGCATTGGGGTACGACATCGGCCCGGCCCACCGGCGGGCGGAACAGATTGACGAAAACCATTTCGCCCTCGGCGGCCGGGCCTGCGGTGTCGCGTTCGTACTGGTAGTCGGTGTAAAGCGCGACCAGCTCGGTGGTAACCGGAACGGTGCGCGAACGCCGGGACTTGGCCAGCGCGCCGTTGGGATTATCCGTGCGGCGCCGGACGTGGAGATGCGGCCCCGCGGTGCCGCAGCCAAGCACCCGGGAGGAGGCCAGCAAATGCAGATCCTCGCGGCGCACAGCCCCAAAGCCTCCCCGATCCGCAGACCCGTACAGGCCAGCAGCGCGATCAGGAACCGGTCCCTCGCCCGCCCCACCAGAGCGATCATCGCGGCGATCTGCCCGGAGCTGAGGTCCTGACAGCCCGGATCGGTGAACGCGAACCGGAACGCGCCCGCCTCCACGGTAGGCAAATGGCCC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 116956-118082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHU01000052.1 Streptomyces sp. NRRL S-1314 contig52.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 116956 28 100.0 33 ............................ CGTCACGTGACGATGGCCCGGAGGGGGAGGCAA 117017 28 100.0 33 ............................ CCCGCGTGTGACCTGCGGGTTTCCGGGTTGACC 117078 28 100.0 33 ............................ GCGTGAGCAGGAGGAGCGGGAGCGGCGCGAGGA 117139 28 100.0 33 ............................ TCCATCAGGCCTCCCGTGATCACTCGCGCACCA 117200 28 100.0 33 ............................ TTGCTCGGAACGGCTCGTAACCGCACGCCATTC 117261 28 100.0 33 ............................ CAAGGGTCTGATCCGGCAGATCCTGGAGATGGG 117322 28 100.0 33 ............................ CAGATCCGACGGCGTGACGTTCCCGTTCCCGAC 117383 28 100.0 33 ............................ TTCACTCCGCAACGGGTACGCCGCGATCTCACA 117444 28 100.0 33 ............................ CCCTGAGGCGGCCCGTGCGGACGCTGTGGCGGC 117505 28 100.0 33 ............................ CCCGCAGCACCGGCCAGGTGGGGGCGGTGCCGT 117566 28 100.0 33 ............................ CTCTCCGACGTGGTGAACCTTGCCCTGCTTGTA 117627 28 100.0 33 ............................ GGTCACCCGGTGGGCGGCGCGCGGCGAGGTGCC 117688 28 100.0 33 ............................ GCTGAAGGACGGCCAGAACCGTCCGCTGTGGGA 117749 28 100.0 33 ............................ GCCGTACAGCCTGCTGTTCATGCACGACCCGAC 117810 28 100.0 33 ............................ CTGGCCGTGGATCCTCGGCGCCTTGACCGGACC 117871 28 100.0 34 ............................ ACTGACCTGAGCACGACCGACCAAGGAACTGAGG 117933 28 100.0 33 ............................ CGAGCCGAACCGCCCCACCGAGGACGGCCCCCT 117994 28 100.0 33 ............................ GAGACCGTCTTCGTGACCGGCGACCGCGACCTC 118055 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 19 28 100.0 33 GTCGTCCCCGCACCCGCGGGGGTAGCTC # Left flank : CTGCCAGATGAGGACCTTGGCGCCCTCTGGGATGACGGCGACACCGTCGTCAGCAGCGGCCGCAACTGGAGCGCCACCCACCACCTCGATGTCATCCCGGAACCCACCGACCCTACCCCCGCCGGGACGGCTCCGTGAGCGCCGGAACGACTGTGGTCGTGCTCATCGCGGCCCCACCCGGCCTCCGGGGACACCTCACCCGCTGGTTCGTCGAAGTGGCTGCTGGCATCTATGTCGGCAACCCCAATCCTCGGATCCGGGACCGCCTTTGGAGCGTCCTTGTCGAGCGCATCCATGACGGCCAAGCCGTCATGATCGAACCGGCGGCCACGGAACAAGGCTGGTCTACCCGCACCGCTGGCCGCGACCGCTGGACCCCCGTCGACTTCGACGGCTTGACCCTCATGGCCCGTCCGCGCCAGAGCGGACAGCCCTGGCGGCCCACGAACGAGGTAAAGCAAAATGGCATGAGCACCTGACAACACCGCAGGTCACGAAGT # Right flank : CTACCCGGCGCGGGACTGGCGCGGGACTGGCTGGAAGGCCCAAGTCCTACCCGCACCGAGCGGAGATGTGCCGACGTTTAATGATCCCGAGAAGCCCACACCACGTGGAGTCCGGCAGCCGTGAACAACTCGGTGTACGGCACGGCAGCTCCCCAGCACTCCTGCGCCGACCGGGCTGCTCAGGTGCAAGACAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //