Array 1 59-1064 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWLZ01000181.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 59 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 120 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 181 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 242 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 303 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 364 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 425 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 486 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 547 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 608 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 669 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 730 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 791 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 852 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 914 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 975 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1036 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGTG # Right flank : TGTCCAATTAACCCAAACTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29570-27910 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWLZ01000023.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29569 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 29508 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 29447 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 29386 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 29325 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 29264 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 29203 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 29141 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 29080 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 29019 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 28958 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28897 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 28836 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28775 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28714 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28653 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28591 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28488 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28427 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28366 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28305 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 28244 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 28183 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28122 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28061 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 28000 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27939 29 96.6 0 A............................ | A [27912] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47194-45701 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWLZ01000023.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47193 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 47132 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 47071 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 47010 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 46949 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 46888 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 46827 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 46766 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 46705 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 46644 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 46583 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 46522 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 46461 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 46400 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 46339 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 46278 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 46216 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46155 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46094 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46033 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 45972 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 45911 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 45850 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 45789 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 45728 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //