Array 1 41671-41154 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCRA01000051.1 Escherichia coli strain FHI53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41670 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 41609 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 41548 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 41487 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 41426 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 41365 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 41304 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 41243 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 41182 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 58909-57172 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCRA01000051.1 Escherichia coli strain FHI53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58908 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 58847 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 58786 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 58725 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 58664 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 58603 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 58542 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 58481 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 58420 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 58359 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 58298 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 58237 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 58176 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 58115 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 58054 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 57993 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 57932 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 57871 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 57810 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 57749 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 57688 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 57627 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 57566 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 57505 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 57444 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 57383 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 57322 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 57261 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 57200 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTAAAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //