Array 1 222594-223159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABURY010000006.1 Frischella japonica strain Ac13 Ac13_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 222594 28 96.4 32 .......G.................... TTTGATTGCCATCAGCATTGAACTTTGCTTAT 222654 28 100.0 32 ............................ AGTCACTTTCTCTGAATTCTTTTGTCATTGCT 222714 28 96.4 32 ........................T... TATATCATGATTATTATTAATTGCCGTTTGAG 222774 28 100.0 32 ............................ TATGTTACCAAACAATTAAATAGTCTATTAAA 222834 28 100.0 32 ............................ CGTAGTATGGTGGAGATGTAACACAACAATTA 222894 28 96.4 32 ........G................... GCTATCATGTAGCCAGCCGTTGTTTCGCACCT 222954 28 100.0 32 ............................ AGCAGTTTTAATAAATCTTCATTTGATGCATT 223014 28 96.4 32 A........................... AAAGAGGAGAAGATTAAACTATGAAACCAGGA 223074 28 100.0 29 ............................ CTAAAAAAATAAACATAGTGATGAGAATT 223131 28 78.6 0 ...T.....T.....AA.....A.T... | A [223153] ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.4 32 GCTCAATACCGTATAGGTAGTTTAGAAA # Left flank : AAGTGCGCTACAGCAACAGGCTGCCATTGCTGACTATGTATTGATTCTACCAATCACAGCCATACCAACTGAAGTTAAGGGCTATTTACGTTTAATTCGGGTTAATCCTAAAGGACAAAGTGCATTAAGACGTGCTGAAAAACGCTTAACCGCTCAGGGTAAATGGTCTAGCGATGTACAACAAAAAATGATAGAAAAATGGGGAAGCATTAATTTAACCTATCCTCATCTACATATAGATAGTCAAAGCACAGGTCAGCGCTTTATTATGTGGTTAAAGCAAGAAAGCGTTGCCGAGCCTGTAAAAGGTACATTTAATAGCTATGGACTCAGTAAAATAGCAACAGTTCCTTATTTTTAAATTACCAGACCCTTTTTTTGAGGTTGTTTTTAACCTATTGATATTTATTAAAATATCTAATATAGCGCAAAAAAGGGTCAAAATAAAAAAAAGTACTATAAGCTCTTTTACAATAAGGAAAACTAGCAAAAAAATTCTA # Right flank : AATCATATTATCCTGCGTAAAACACATTTCAGTTTTACTGTTTCATTTAGATTTAAAAGATCATTACTACAACAGAATTTAATGATATATTAAATCATACTAAGCAATGTTTTATTAGCTATATCATTATGATTAATTTGAAAAAATAAGTAATTCGTTAAATTTATAATGTTAAGATTTAGTTGATGATTATTTTTAACTTTTAGCCGTATATGATAAAATTAATAAAAATTGGTTCGCCAATGGTCGTTTGTCATTAAACTATTAGGTACATTTTGAAAACATCAGATACTCCAGTTCAGCCATCAATGAAAAGAAATTTAACGTTTAAACTATTTGCTATCGACGTGTTATTATTTTTCACGATTCTTGGTGCGATTTATTTAATATTGTCATTAATTTCGTTTTCGTCTGCTGATCCTGGCTGGTCTCAAACGGCTTGGTATGAGCCTATTCATAATTTAGGCGGCGAAGTCGGTGCTTATTTATCCGATGTTTTG # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCAATACCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 229218-230206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABURY010000006.1 Frischella japonica strain Ac13 Ac13_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 229218 28 100.0 32 ............................ TACCCCCCTTCAACAAAGCAATGGCATGAAAA 229278 28 100.0 32 ............................ ATTTGCGGCCAGTACACATCATTTGCCATTGT 229338 28 100.0 32 ............................ TAATGATGAAGAATCTGTGTTGAATAATTTAT 229398 28 100.0 32 ............................ TTGCCGGGACTGCAACTGGCGAATGGTCGGTA 229458 28 100.0 32 ............................ GTTAACTTCAGCGCTTGGGAATTGATAACGGA 229518 28 100.0 32 ............................ GCAAGGTGGGTTAAGTAAATACGCCATGATTA 229578 28 100.0 32 ............................ ATTAGCCAAGCAGTAATCTTTAAACTTAATAA 229638 28 100.0 32 ............................ TCCCAAATCCAAGCGTATGATGCATAATCCAA 229698 28 100.0 32 ............................ AGTAACCTTTAAAATTATCAAATGTTCCATTG 229758 28 100.0 32 ............................ AATCTACCTTTTTAGTAACATAACGAGCAACA 229818 28 100.0 32 ............................ ATCCAAAAACAGTGCTGGGTCAATCCATTTTG 229878 28 100.0 32 ............................ TAGCGCAGGAAAAGGTGATTTTTTCAAGCACC 229938 28 100.0 32 ............................ GCAGACGCGGGCGAGATGAGGGTAAACATTTA 229998 28 100.0 32 ............................ ATATCCCTACGTATTTTTAACATACTGCGGGA 230058 28 100.0 32 ............................ TCTAATTAACATTTCTAAAGAACGGTTATAAT 230118 28 100.0 32 ............................ TCAAGATAAACTAGAAGATCATATCAATTTTA 230178 28 92.9 0 .....................A..A... | C [230198] ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTTCACTGCCGTATAGGCAGTTTAGAAA # Left flank : TGCCTGAATATTTTATAAAAATTGCTTTACTCAGCAGTCGATAAGCGGGAAAGCTAAACAGCATTACGTCAATAACGGATTAATAATTAAAAAAACGCCACAAAGCTATCCCAACCTGCAGCCAGAGGGTTTTCGTTCAAAAACCTTCAGGTTGCCTGAGCATCAGTAGCTATATATTACACTCTGCTTGAAACACCAAATGAATAGCATGATAAGTAAGAAAGTAATCTGTATATAATTCTAACAATAGCAGTAAATTAAAAAGATAAGAAACGGGTTTTTTAAACTATGGTGCGGTTTTGATATTACAAAATACAGAATCCGATCTCTTCTCTTATTAAAATAAAACATTTAAATACGCTATTGCCAGACCCTTTTTTTTAGCTAAATTTAAAAATAAATATAATCAATAAGTTAAAACGTCTCTAAAAAAAGGGTTTTTGATTACTAAATTTAAGTTTGCCCTTTTGCTAATAAGGTTTATAGTATGCTACGTTCTA # Right flank : ACCCAATATATATTGGTGATTGTGTTGTTAATCAGTTACAACTGCTTAACATTCTTAATATCACTCTAACAATGGTTATCCTTCACTTTATTGGGATAATCGTTGCACTTCCGTGAAAAAAGAGTATAATTCTGGGGCTTTTATTTCTGTTTTGTCAGTAATTTCATTGGCAAACGGCGATAAATTAAGCAAGAAACAATTTAATTTTAAGAGGAAGTTATGGTAACTATTCGTTTAGCTCGTGGCGGTTCTAAGAAACGTCCATTTTATCAAGTCGTTGTGACTGATAGCCGTAACCCACGTGATGGTCGTTTTATTGAGCGCGTAGGTTTCTTCAATCCAGTTGCTCAAGGTAACGCAGAAAAAGTACGTTTAGATCTTGATCGCGTAAATCACTGGGTAGGTTTAGGTGCTACTATGTCTGATCGTGTTCGTTCACTTGTCAAACAAGCGCAAAAAGCGGCTTAATCATTTGTGAATAGCTGTTTAGGTAATCCGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 20220-18993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABURY010000017.1 Frischella japonica strain Ac13 Ac13_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20219 28 100.0 32 ............................ AAATGTGTCCAAGTGTTCGGGCATTTTATTTC 20159 28 100.0 32 ............................ CTTATAAAGAAGCTCATTTTGCAGTATTTCCA 20099 28 100.0 32 ............................ TTTAGCTGCGGTCGGTTCTGTTGTCTCTGATG 20039 28 100.0 32 ............................ TAATGCCTAATGTGCAATTAACAGCTATTAAA 19979 28 100.0 32 ............................ CATTCAAGGTAAACAAGGAGATTGTGAATACA 19919 28 100.0 32 ............................ TTGAGCCTGAAGAAGCTGGGCTTCTTCCTTTG 19859 28 100.0 32 ............................ AGCCGAATTGACTAAACTGTACTTAGAATAAG 19799 28 100.0 32 ............................ CAAAATTGATATTTTTTAATAAATAGCGTAAT 19739 28 100.0 32 ............................ TTTAGCCGAAGTTGTAGCATCTGTTTCCGCAG 19679 28 100.0 32 ............................ TAACGATGTAATAAATCGATATCCGAACGTTT 19619 28 100.0 32 ............................ TTTGATACTACCTTAAAAAGCTGGCGGGCTAA 19559 28 100.0 32 ............................ CACTGAATTTCTGTTAACAGAAAAAATATATA 19499 28 100.0 32 ............................ AGCGGAAGTAATGAATCCTCAGAACAGCTTAC 19439 28 100.0 32 ............................ TGATTCGAATACATATCCTCATTTGAAAATTT 19379 28 100.0 32 ............................ ATTGATCCGAGGATATTATCGATTTATCTCCC 19319 28 100.0 32 ............................ CGTATACCGCTAAAGCCACGATATGGCGTGTT 19259 28 96.4 32 ................A........... AGCTAGTACTGGAGGGTTTGAACGGGGGCATT 19199 28 100.0 32 ............................ ACTTAAATTAGAATATTTTAAGTTAATCTGTT 19139 28 100.0 32 ............................ CGGCATCACCAATACGTAATACATTCCAGTTT 19079 28 100.0 32 ............................ TCTGATGATGATTTCGAAAATTTATCAGTCGA 19019 27 89.3 0 ......................-..CC. | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.3 32 GTTCACTGCCGTATAGGCAGTTTAGAAA # Left flank : ACTTAATATCATTCCCTGAAAAATGTTATGCAAATCCTTAGCCAGAATCGAATAAATATTAATAAATCAGGATTTTTTATCGTGCGCAACACAACGCGGTATTCCGAGAACTTGTTGGATTGCTTTAAAACCTTAGGATCGTCTAAGCATTGATAATAGCAATTTTGCCATTGCTTTAAAGTCAAAAAAGATAGCTTGCTAGTTGAGAGAATAATCTGTAAATAAACGCTAACTATAACGGCGAGTTAATAAAAAGATAACAAACGCGTTTCTTAAACAATTGAGGTTGTATCGGGTTTTGATATTACGGTAAGCAATATCTGACATCCAAGCTTATTAAATAAATCACCACAAAATGCAATTGCCAGACCCTTTTTTTTTAGCTAATTTAAAATATAAATATATTCAACAAGTTAAAAAGGCTCTAAAAAAAAGGGTTTTTTACTTCCAACTTCAAGTTTGCCTTTTTGTTAATAAGGTTTATAGTATGTTTGGTTCTA # Right flank : GACATGTTAGTCTTTACCCTGCCTAGCAGATTATTAAACCCAAAGGCTTTTTTAAATGTCTTTGGGTTATTTTGATGTTGGTAAAAATGAATTTTACTATTGTTTGAAGCCGTAATGCTTACTATTATTTAAAACAAATTTGTCTTATTCATTCTCTGTAAGTGTTTTTAAATATTGAAAAATTTGGCGCGCTGATTTTGGTGGTTTGTTGTCGTCGCGTTCTTTCTTAGCGGTTCTTGCTAATTGACGTAATTGTTGGCGGTCAGCTAAAGGGTATAATGCCATAATTGGCTCAGCGTTACCACTTTCGATTAAATCATCTCGTAATTGTTCAAGTTTATGGAAAAGGGCATTTTGCTGATTATGGCGATTTTTTAATTTGTCCAATGCTTGGCTGATCGGCTCGATATTACGATTACGTAGCAATTTACCAATATACTGGATTTGGCGACGATAACCTTCTTTTTTAATTTTTTGTGCCAATTCAATGGCATAAATCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 24601-24033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABURY010000017.1 Frischella japonica strain Ac13 Ac13_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24600 28 100.0 32 ............................ TTTTGCTTCCTTAGTTAGCTTGCTCATTGTCA 24540 28 100.0 32 ............................ GCTTGAAGGAAATGGGATTATTAGCTGCAAAA 24480 28 100.0 32 ............................ CGCAGGTTGATTAGTTTTTTTACGCCACAGCT 24420 28 100.0 32 ............................ ATCCATCAGCACGTAAAGCAAAAGCCAACATC 24360 28 100.0 32 ............................ CCGGAGGAATATTGTTATTTACTACATATTGT 24300 28 100.0 32 ............................ TCAGAAGATTTCTTTTTATCAATCGCATCCTT 24240 28 100.0 32 ............................ AACAAAATTAATCAAGGGTTTTAAATCAAAAA 24180 28 100.0 32 ............................ TATATTTTTCATATTGACATTAATAATCTGAT 24120 28 100.0 32 ............................ AGTCACCAACTTTTTTATCATTTTCAACTGCT 24060 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTTACTGCCGAGTAGGCAGTTTAGAAA # Left flank : AGACTAGTCGTAAGTGGACGGAGTAATGCTTGAAACTTTGGCTTTAATTGGTAAATAGATAACACAGCACATTCCTAATCATTTATTATCTTTGAATTGCCTTTACTGCGATTAATTAAAACGTAGAATTCGATGTATTATACAATGGTTTGTTATCGTGTATAGCTAAATTATAATAGCTTTTAATCATGGTGATTTTGATGGATTAACTAAGCGCAATTCATAAATTATCGTTATCGATAATAAAATGAAATATTATATGGTAATGACAATTTTATGCCAATATCTACCATTTTTATGATTAAATTCCTGTGTGAAAAATTTTCTTAGCTGTTCATAGTTAAATACCGCCAACCATACAATTACTAACCCCTTTTTTTTACCAAAATTAAAAAATAAATATAATCAACAAGTTAAAAAGCCGTTAAAAAAAAGGGTTTTAAACGCCTAAACTCCAGTTTGTCTTTTGCTAAACAGGGTTTATAGTATGTAGTGTTCTA # Right flank : TAGCACAAGGAAAGGTGATTTTTTAATCATCTCTTAATAAAAAAGGGCTCTATTGAACCCTTTTTTAAATTACGCTAACCTGATTGAATTCATTTTTTAAAACAATATTAATTCATATCACCAAGTTTTTAATAGGCCTTTAATGCGACATTGATGTAGAAACCCCACCTTCTGGTACAGCAACATAAGGTGTCTCTTTATCACTTCTTTCTTTGTTGTTGCGTACTTTAATCGCAGTTCGAATACCATAAAAAATAATACTATAAACAACAACTAAGAATAAAATACTTAAACCAGCATTTGTATAGTTATTGATGACGATTTGGTGCATATTATTAATTTGTTTTTCAGTTAAGCTTGGATTTTCAGCAATACGGCGATTATATTCTTTCGCTAAATATAGGAAGCCTTCTAATTGAGGATTATCGCTAAATAGTTTTAGACCAAGTGCCCAAGTGGTACAAATTAATAACCAAATAGCAGGGATAACGGTAACCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGAGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 30365-29317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABURY010000017.1 Frischella japonica strain Ac13 Ac13_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30364 28 100.0 32 ............................ AGAGTTTAAAGCGCCATTGAGATTGGTCCTGA 30304 28 100.0 32 ............................ TGCGATCTCATTACCAAAATCATCTACTTGCC 30244 28 100.0 32 ............................ AAGAAGTAGGATTTATCCCCCACCCTTCAATC 30184 28 100.0 32 ............................ ACGACGTGATGGATCGCGCATATCAGTTAAAT 30124 28 100.0 32 ............................ TTTTTAATTTCACATTTTAAACTTTCGATGTG 30064 28 100.0 32 ............................ AAACGCAACGGGGGAGCAAAAAGACAGCTCCA 30004 28 100.0 32 ............................ TCAATCCCTACTTTACGACTGAAACGAGCATC 29944 28 100.0 32 ............................ ATTGATTATTGAGATTTCTATTAACAATAAAT 29884 28 100.0 32 ............................ AGAAGATGAAGAAAAAAAGAAAGCTTTAGACA 29824 28 100.0 32 ............................ AGGAGTAAAAAATGGGTTCAAGAATAACAGGA 29764 28 100.0 32 ............................ TGCATAAATTGCCGCTAAAGCACCAACGCCCG 29704 28 100.0 32 ............................ GGATCTGCAAGTGCCTGTCTTTTAATTTCACT 29644 28 100.0 32 ............................ TTTAGGGTCGGGGATATAACTTTCAATCTGTG 29584 28 100.0 32 ............................ ACTTCCGGATAATGATACGAGCCGCACTCGGA 29524 28 100.0 32 ............................ AAGGTAAGGATAATCAATACCGTTAAATATTG 29464 28 100.0 32 ............................ ATTGTTGTTGAGTACTGAACTCAGTGCTTGTA 29404 28 100.0 32 ............................ TCAGCGATTGTTTTCATGCCATTGCCAACCCT 29344 28 89.3 0 .....................AA.T... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.4 32 GTTCACTGCCGCATAGGCAGTTTAGAAA # Left flank : ATATTCATACCGAATATTCTTTTAAAATAGATTTACTCTGTAGTACTTGTGTGGGACAAAGGTGAAAATCATATTTTAAATTTTTGATATAAAAAATATTTCTATTGATAAGTTTTAGATTAATACCAATTAGTCACTAAACATGCCAAACCAAGCAATATTGTTAAACTATGCTTTAGCATATTATTTTTACTAAATTTTCACCCCTGCGCAGTAGAATCCGGATGCCAGGTGATTTTGTTATAAACCTTCAGAGACTCTAATCATCAGTAGCAATAAAATTCACCATAATTTAAAAAGCGAAAAAAACAAGCACCACAAGTTAGTGAATAATCTATGTACATTAACTAAATTTAAAGATATCCCTAAACCCTTTTTTTTAACTAATTTTAAAAATTAGCATAATCAATGAGTTACAAAACCACTTAAAAAAAGGGGTTTAAAACCCAAAATTTCACTTTGCCCTTATGTTACCTAGGTTTATAGTATATAGCGTTCTT # Right flank : TTGCTGAAAGGTGGTTTTCGTCAATGTTATCTAAATAATCTAAAAGTCTAATTTTTATATTTATGACATATAGGTTGATTTTAATCACATAAATTAGCTTAAAGGTATTATACCAATGATTGATATACAACTAAGTAATATCGTTTGTATCACCAAGGTGATGATTTGTTTTTTTAATAATATTAAAGTACCCATTTGACGGTCGGTTATTGATCGTGATGGTTGTATTTTGGATTTGATTAATTTTAATTGTATTAAGGTATCATCTAACTCTTTTAGCGTATTGGGGAGTTGATCGAACTTGGTGGCTAAGTAGTCAAATAGTTTTTTATCAAATGCGATTCGTAAAGCGTAATATTTACTAAACAATCCAATTAAAAAACAAGCAACATAACCAACGATTAACATGGCAGAACTTGCCGACAAACTTGCTATTAAGGCAAACGATAATCCAATCATCGTGAACATTAGTGACATAATATCCAATTGCCGACTTATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //