Array 1 68675-69923 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOE01000067.1 Escherichia coli strain KG-13 NODE_23_length_86928_cov_5.53438_ID_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68675 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 68736 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 68797 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 68858 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 68919 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 68980 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 69041 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 69102 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 69163 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 69224 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 69285 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 69346 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 69407 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 69468 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 69529 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 69590 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 69651 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 69712 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 69773 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 69834 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 69895 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8687-10606 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOE01000033.1 Escherichia coli strain KG-13 NODE_14_length_136217_cov_5.56036_ID_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8687 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 8748 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 8809 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 8870 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 8931 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 8992 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 9053 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 9114 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 9175 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 9236 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 9297 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 9358 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 9419 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 9480 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 9541 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 9602 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 9663 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 9724 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 9785 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 9846 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 9907 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 9968 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 10029 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 10090 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 10151 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 10212 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 10273 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 10334 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 10395 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 10456 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 10517 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 10578 29 96.6 0 ..................A.......... | Deletion [10639] ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //