Array 1 38140-40182 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNS01000014.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712389, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38140 29 100.0 32 ............................. ATAGTGGGGGTTTTCCTTTTATGGCTTCCGGA 38201 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 38262 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 38323 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 38384 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 38445 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 38506 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 38567 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 38628 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 38689 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 38750 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 38811 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 38872 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 38933 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 38994 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 39055 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 39116 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 39177 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 39238 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 39299 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 39360 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 39422 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 39483 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 39544 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 39605 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 39666 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 39728 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 39789 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 39850 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 39911 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 39972 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 40033 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 40094 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 40155 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56697-58616 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNS01000014.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712389, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56697 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 56758 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 56819 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 56880 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 56941 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 57002 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 57063 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 57124 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 57185 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 57246 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 57307 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 57368 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 57429 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 57490 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 57551 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 57612 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 57673 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 57734 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 57795 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 57856 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 57917 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 57978 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 58039 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 58100 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 58161 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 58222 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 58283 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 58344 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 58405 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 58466 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 58527 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 58588 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATAGCGTGAGGCAATTCTTAGCGTTGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGTTGCACCTGAGCGCCCCTTCACTGGACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCAGCTTGCGGAAAAGATCCGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 58938-59455 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNS01000014.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712389, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58938 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 58999 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 59060 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 59121 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 59182 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 59243 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 59304 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 59365 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 59426 29 93.1 0 A...........T................ | A [59452] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCAGATTTACGACAACAACCCGGCAGCGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //