Array 1 441379-442870 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCO01000001.1 Salmonella enterica subsp. enterica serovar Havana strain BCW_2695 NODE_1_length_667918_cov_5.03109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 441379 29 100.0 32 ............................. CTGTCCTTTTTCATGTTGATGACGTCGCCCTC 441440 29 100.0 32 ............................. TTGTTACGAGGCGTCGAAACCTCTTACAAGCG 441501 29 96.6 32 ............................A GCAGCGCACCACGCAGCAGGAAAGTTAATCCC 441562 29 100.0 32 ............................. GATCGTGTTTTTTTAGCAGCGTCATCGCGCCA 441623 29 100.0 32 ............................. CTGTCAAACTGGATCCCCCTCATCATCATTGC 441684 29 100.0 32 ............................. GCACATCTGAATATTTTACAATAAATTCACCA 441745 29 100.0 32 ............................. AAAATTATTATTTTTGCAACTGCAATTCTGCT 441806 29 100.0 32 ............................. ATTGCTGTTTATTCGCGGCTGATTGCGCCGTG 441867 29 100.0 32 ............................. GAACAGGCCCAGGCTGCGCAGCAGCAACAGAT 441928 29 100.0 32 ............................. CTGTAGGGGCGCTGGTGGCCGCTGCGGTGGTT 441989 29 100.0 32 ............................. AAATCACAAAGCGCCCAGGGGGAGCAAATAAC 442050 29 100.0 32 ............................. CCTCCTTACTGACGCTGTGTGCCTCCTCTATC 442111 29 100.0 32 ............................. TTTTTTCAGAGGTTCGCGCCGGGATGCGCAAT 442172 29 100.0 32 ............................. TTGTCGTTAGCCCCCCAACTTATATTAATGGA 442233 29 100.0 32 ............................. CATTATGGTAAAAATAAATTTTTCCAAATAGA 442294 29 100.0 32 ............................. AGTACGAGGCACTATTCGGCAAGAAACCGCAC 442355 29 100.0 32 ............................. GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 442416 29 100.0 32 ............................. GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 442477 29 100.0 32 ............................. CGCCATAAACGCGACTCCGTCACACATCCGTA 442538 29 100.0 32 ............................. ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 442599 29 96.6 32 ...........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 442660 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 442721 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 442782 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 442843 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 459130-460564 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCO01000001.1 Salmonella enterica subsp. enterica serovar Havana strain BCW_2695 NODE_1_length_667918_cov_5.03109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 459130 29 100.0 32 ............................. ACATTCTGGTCTACGTTATCCAGTTCGCCAGC 459191 29 100.0 32 ............................. ACGAGTTTCTGGCCCGCCTGCCCGGGTTGCAG 459252 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 459313 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 459374 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 459435 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 459496 29 100.0 32 ............................. GGACAAAGACAACGAGCGCATGGTGCATACGG 459557 29 100.0 32 ............................. AGGCTGGTGTAATTATCGCAGGGCATGGGCGG 459618 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 459680 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 459741 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 459802 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 459863 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 459924 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 459985 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 460046 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 460107 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 460168 29 100.0 32 ............................. CCTGGCACTCTAAAGCGGTGCGCCATACCCGG 460229 29 100.0 32 ............................. ATGTCTGGCAGATACTGAGTTTCCAGCTTGTT 460290 29 100.0 32 ............................. ATTGTTGCGCCACCAAAATTTTGAGCGCCACG 460351 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 460412 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 460474 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 460535 29 96.6 0 A............................ | A [460561] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGAACAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGTGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //