Array 1 48-5262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGJ010000003.1 Bifidobacterium boum strain WCA-130-P53-4B Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48 29 100.0 32 ............................. TTCAAGAGCATGGCGTCCGAGTGCATCGCCGC 109 29 100.0 32 ............................. CGGTGCCGCACGGCTACCGGATGGACGCCCGC 170 29 100.0 32 ............................. CGACTGTGAGGGCTGATAAGTCTTCAAAGCTC 231 29 100.0 32 ............................. AGCTGACGTTCGCCTTCACATCCCACAAGTCC 292 29 100.0 32 ............................. CCACGGAAGACACAAGATTATTGATTGCATCC 353 29 100.0 32 ............................. TCCGGGCAAGGTTTTTCTCGCCGGGTACGATA 414 29 100.0 32 ............................. TAGTCATCGGTTCAACCCCACAATGTGGGGAA 475 29 100.0 32 ............................. GGGCGACGCGGGAACGTCTCGCCGCTGTGTTG 536 29 100.0 32 ............................. AGCCCAACGCAAGCACAGTCAGCAAGCACCAA 597 29 100.0 32 ............................. AATCTCGCCTGAATAAATGCGGCACACCTTCT 658 29 100.0 32 ............................. GAGATCCAACGCCGCAACAAGGAGCGCATCCC 719 29 100.0 32 ............................. GGACGTGGAGCCGAACGCGCCGATGATGCTCA 780 29 100.0 32 ............................. GTCACGCGCAGTCACCTCCGCGTTCAACAGTT 841 29 100.0 33 ............................. AACTATGAGCCGATTACGGTAGACGGGAAGCAT 903 29 100.0 32 ............................. GTGCGGATTCCTTTGTTCGCGTTGCCGCCGTC 964 29 100.0 32 ............................. GTGTGGTACCGTCCGAGGCTCATGGCGGTCAC 1025 29 100.0 32 ............................. AGCAGACCGAAGAGCAGGCCAATGATGATATG 1086 29 100.0 32 ............................. TGCCCGCACTCACCAGCATCATGCTCCGCCAA 1147 29 100.0 32 ............................. GCACATCAGTGTCAGTGTTCATTTCGCGTCCT 1208 29 100.0 32 ............................. CGTTCTTGTGCGTGGTGAAAGTCACGGACAGC 1269 29 100.0 32 ............................. TCTTCCAAGCCTTACGCCCAGTGTCGGTCTGC 1330 29 100.0 32 ............................. AAGTACACGTTCCGGCCGAATGCGGCGACGAG 1391 29 100.0 32 ............................. GAGATCACGAAGTGGAGCAATTATTTGAATTC 1452 29 100.0 32 ............................. GGTATGACGCGCGGCGCTACGGGCATCACTTA 1513 29 100.0 32 ............................. GTTCCACCGTCGCGTCGATACGTTCCGCACCG 1574 29 96.6 32 ............................G GCGGGGTTCGCGGTGTCTACTCGTGAGACCGT 1635 29 100.0 32 ............................. CACCGGCTCGGTATCGCGTTTACTGCGATTGA 1696 29 100.0 32 ............................. CATTGTGTGTCCTTTCCGGTAATGGGCGGGAG 1757 29 100.0 32 ............................. AAATACGACGCCGGCAAGGATGATGACCGCGA 1818 29 100.0 32 ............................. CACAAGATTCAGGTCGTGCGCTGCGACGAGGT 1879 29 100.0 32 ............................. GACACGCTGAGGACACAGCGTTATTTACGGGT 1940 29 100.0 32 ............................. CCTAAAGCGTTGGGGCTTTAGGGTGTGTCTGT 2001 29 100.0 32 ............................. TGTTGATAAGTGGCTAATTCGTTGATTTATCA 2062 29 100.0 32 ............................. GGGGTTTTTTACGATTCTGAAGAAATCACCCA 2123 29 100.0 32 ............................. CGCAACGTGTACACGCCGCTCTTCTCGTCGAT 2184 29 100.0 32 ............................. TTAGTAAATGCAGTGGACGAACTTGGAGTAAA 2245 29 100.0 32 ............................. GGTATCACTCGAATCCTGAGTGGCGTGAGAAG 2306 29 100.0 32 ............................. TGACCATCCACGGCGCTAGACCTCCCACAGGA 2367 29 100.0 32 ............................. GGAGGAACCAGCTCTACTCTGACCTGACGCTG 2428 29 100.0 32 ............................. GTGACTGAGAAAGACAAGACACTCTACAAAAT 2489 29 96.6 32 .......................A..... AATGTAATCCAACGCGCGGCCAATAGCGGCGG 2550 29 100.0 32 ............................. TGAGCGGCGGTATACCCCTGTAGAGCCATTTT 2611 29 100.0 32 ............................. GGGGGAAACACATGGACGATAAAACATATATA 2672 29 100.0 32 ............................. CACGAATCGTCTTCGTCAGGTTCAGGCGGGCG 2733 29 100.0 32 ............................. GCGTCATCCTCCAGGCCAAGGAGCCAGAGTTT 2794 29 100.0 32 ............................. CGTGTCCACGCGGTGACGGGCGTATGGCCGGT 2855 29 100.0 32 ............................. CCGAAGATGGCCGCCCAGCTCTCCTGCGCCCA 2916 29 100.0 32 ............................. ACGTCGCTGATCGTGCATGTCTTGCTACCGTC 2977 29 100.0 32 ............................. GTTGCGGACGACCGGCCAAGATCGTCCACCAC 3038 29 100.0 32 ............................. GCATGCTCACCACCCAGCAGGTCGCCCGGATT 3099 29 100.0 32 ............................. CACAACCGCAACCGCATTGGTAATGCCATTGA 3160 29 100.0 31 ............................. CGTGTATGACCTGCAGACGATCGCAAGCACA 3220 29 100.0 32 ............................. CCTTCTCCAAGCCCGCGTTGAACCGTGCGGCG 3281 29 100.0 32 ............................. GCAACAAGCGTGAAGCCGAGGAACAGCGCAAG 3342 29 100.0 32 ............................. GACCATGTACCGGTCGGCAAGCTTGTAAACAG 3403 29 100.0 32 ............................. ACCCCGGAAGTGATTGCACCCATAGCATTCCG 3464 29 100.0 32 ............................. TCACGCCATTGGTTGGAACGGCGATATACCCC 3525 29 100.0 32 ............................. CTGAACTTCCTCGTCGACCGAATCATGGACGC 3586 29 100.0 31 ............................. CGTGTATGACCTGCAGACGATCGCAAGCACA 3646 29 100.0 32 ............................. CAAGTTTCCGTCATACGCAGTGCCAGTCGCAC 3707 29 100.0 32 ............................. CCGGTATTACCGCTCCCGCCAGCAGCGTTAAG 3768 29 100.0 32 ............................. TTAGTGAATGCAGCGGACGAACTCGAACTAAA 3829 29 96.6 32 ................T............ GACTTCACGCGAACGCGAATAGGCGAAATACT 3890 29 100.0 32 ............................. AGAAATGGGACGTAAACGCACGCATAAACGGC 3951 29 100.0 32 ............................. TGACATAGCAAAAAGGCGGGTAGCTGTTGAGC 4012 29 100.0 32 ............................. GTGATGAACATTGTGGACTCGCGCTATCGTAG 4073 29 100.0 32 ............................. GATAATACGTCGGTGTCGATGGTGAGCGTGGA 4134 29 100.0 32 ............................. GGCTGGGGCGGTAATCTTGACCTTGACAAGTT 4195 29 100.0 32 ............................. AGCTCGAAGAGTGCGGGTATCTGCAACGTCGG 4256 29 100.0 32 ............................. CAACTGGATTGCTGGGGGTCGAAGCGTCGCCG 4317 29 100.0 32 ............................. TCGTGACCCTTGCCATCACGCCACACATGCGT 4378 29 100.0 32 ............................. AGCCACATACCATGCATATGCGGCTTTTTGCG 4439 29 96.6 32 ............................T GGATCCGGCAAGACTCTGTGTATGGTGCATGA 4500 29 100.0 33 ............................. ATCTGAAGCAGCACGGCAGTATCACAAGCATGG 4562 29 100.0 32 ............................. CGACACCAATACCCTCAGCAAGATACCGTCCA 4623 29 100.0 32 ............................. GGAGAGCCGACAGACCGCCTACGGGAGCCGGG 4684 29 100.0 32 ............................. TCAATTCCAACAAACACCCCGATTCAATATCA 4745 29 100.0 32 ............................. TGCGAGGGCCCCGAGATGACATGGGCCCCGTT 4806 29 100.0 32 ............................. TGCACCACCGGGGTGAACTGGGCAACGCCCAG 4867 29 96.6 32 ............................G GCATCGCTGTGGAATCCTCCACCGAATCGTCG 4928 29 100.0 32 ............................. TTCGTCATCGACACGGCGGGCACGACCGTGAC 4989 29 100.0 32 ............................. AGACCATGTGACCTGTTCGTTTCCGTTGTTGT 5050 29 100.0 32 ............................. GGTACGCCTTCCAAGGTCACTGGCTTGTCTAC 5111 29 93.1 32 ......T........A............. TTGAAAAAGGCACCAAGCCTACAGACTGGTCT 5172 29 100.0 32 ............................. TGCGGGACGATGGAACCGATCCTCGGCATGCA 5233 29 100.0 0 ............................. | G [5250] ========== ====== ====== ====== ============================= ================================= ================== 86 29 99.7 32 GTGTTCCCCGCGCATGCGGGGATGATCCC # Left flank : TGCGGGGATGATCCCACCCGTATGACGTGGCTGATATCAAGGCATTTG # Right flank : CCCGCCCGGAATCTCCCGGACGGGTTTGAAACGTCCACGCCGTGCGGCGCGACAGTGGTGGCTGCTGGATTCGAACCAGCGCGGCATCATGCACCCGATTTACAGCCGGGCCCCTTCGACCACTCGGGCAAACCACCGAAGCGGGCACGGGAGTCGAACCCGTCTGCACGGTTTTGCAGACCGTTGCCTGGCCGCTCGGCCAGCCCGACAAAAATGTGTGATACACTGGATTCAATAGCCCGTCTCGATACCACCTGTAGGTGGTACCGAGACGGCCAATCTGATTTTCACTAGTGCGCTATCGGAGTCGATGATGTACACTGAGCCATTTTTGAAAGCTTGCGACCTACGCAGATATCCGATTAATTCGTCATCCGACATACCGTTGTTCTGGGAGTTATCGAAAGCGACGCGAACAGCGTCACGCTTCTTCGCGGTGTTCTTCATGTAGCTATAACTGTGTTCTTGCTTGAGCATTCATGCAGTGATTTCAGCTCGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 293156-294099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGJ010000002.1 Bifidobacterium boum strain WCA-130-P53-4B Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 293156 29 100.0 32 ............................. AATGACAATCACATCAGCGATTTTGTATTTTG 293217 29 100.0 32 ............................. CTAGCAAGCAATAACCCGCATCACCTGAAGAT 293278 29 96.6 32 ............................G CGGTTGGTGCCAACAGTTTCATGCGTTTCATG 293339 29 100.0 32 ............................. AATTTCGAGCCGGAAACACACATTACTGCGAC 293400 29 100.0 32 ............................. GTCCGGTAGTTCGATTGCCCCAAGTTCAATTA 293461 29 100.0 32 ............................. AAATCGGCAATACCAACGAAAACAGCCGATAG 293522 29 100.0 32 ............................. CTAAAATTCTAAGGAGCATATATCATGCGTGC 293583 29 100.0 32 ............................. AATGACAATCACATCCGCGATTCTGTTCATTA 293644 29 100.0 32 ............................. CTGCCGACATCGGCAAGCTGGACGCCGCCGAG 293705 29 100.0 32 ............................. TTGAAATGACTTACCGGTATATGATTCATCCT 293766 29 100.0 32 ............................. AGCGGACCATGAGACGCGCATACAGTGAGCGT 293827 29 100.0 32 ............................. CCGGACGGTACTCCGGCTGATTCCTTCCACTT 293888 29 100.0 32 ............................. GGCGCTGTTCGGCTGGGTCTGGTTTGGCTGGA 293949 29 100.0 32 ............................. ACCCGTATGACGTGGCTGATATCAAGGCATTT 294010 29 100.0 32 ............................. TCTAAGTATAGGGCATTTCGCAAAACGACACA 294071 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGCGCATGCGGGGATGATCCC # Left flank : TGCAGTTCATGTAATCTTTGCACGTATGTTGTTTGATTCCATCGCATGGCAGATGGATATAAAGGTTTATATTGCCGGAACTATGTCAGTGCTGCCAGTGCTTTATTGTTCGCGCGACACGTACCACTTGTACGTGAATGGCACGTGCTGCTTGGCAGCAGACGCGCGTGGTTAATAACAATCTTCTACGCCTGCCCGTTGCTGGCTTTCGCATCCGTCATACGGTACGGGTGTGTGATTTTGACTTGTTCTTGTTGAACTGCCCAGACAGCGTGTAAATATACGATTGGCAACGGACGGGATTGTAGTCGACTGCGACCACAATCTGGTGGATTCCCTGCGCTTGTAAAGGCTTGTTGTTTATATCCTATCTGTGCTTGCAATTCTTGTTCTGACCACAACCGTAATTGAGATGCCATGCTTGCCTCTAGAAAAAGGAAAGTAAATAAAAAAGATGAATGATGATATAATGATCGGCGGGAATCTGCACTTTTCATAGT # Right flank : ACCCGTATGACGTGGCTGATATCAAGGCATTTGTGTTCCCCGCGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //