Array 1 20486-19194 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWWH01000028.1 Neisseria meningitidis strain INS-Nm1177 NODE_28_length_21330_cov_56.8809, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 20485 36 97.2 30 ........G........................... GGTCAGATTATAATAACGTTGAGCGCGTGT 20419 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 20353 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 20287 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 20221 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 20155 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 20089 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 20023 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 19957 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 19891 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 19825 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 19759 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 19693 36 100.0 32 .................................... CAAAAACTTTTTTTAGGGGGTCGGAAAAATCC 19625 36 100.0 30 .................................... CTGAAGCTGATGAACGAGCACGTTTTGTGG 19559 36 100.0 30 .................................... CGTAGGGATGTGTGTTAAATCTACCGTTTT 19493 36 100.0 30 .................................... CGCCCCCATGCTGATGGTGCGCCTCGCCGA 19427 36 100.0 30 .................................... ACATCTTCGCCGACATAACCTGCTTCGGTC 19361 36 100.0 30 .................................... CGCCGAAGCCGCCCCAGTAGGCTTTGGGTG 19295 36 100.0 30 .................................... ACCATACCCGAAGTGGAAACGGTTACGCGG 19229 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 20 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TTCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //