Array 1 15017-12417 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFSF01000014.1 Leclercia adecarboxylata strain As3-1 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15016 28 100.0 33 ............................ CGCTAAGTATGAGCGGTTCTTCGTCTGCGCCAA 14955 28 100.0 32 ............................ AATGATGCTAGCTTGCCTGCTCCGAACTATGG 14895 28 100.0 32 ............................ TCATCGCTAAGCAGGTGGATGACATCACGATC 14835 28 100.0 32 ............................ AGCCAGCAAACTCTTTCCCGTTAATTCGTAAA 14775 28 100.0 32 ............................ CCGGAAACCCGGCCCTTTCCCGCCGATCATCG 14715 28 100.0 33 ............................ CTGCCGGTCTTGGACTTCTTTGCCAGCTATAAC 14654 28 100.0 33 ............................ AGGACTTTTTGCCGGTGATATCGCACGAGTCTT 14593 28 100.0 32 ............................ TTGCTTGCTATATTCTCCCACGCGCCGTATTT 14533 28 100.0 32 ............................ AGCAGAAATACCTCATCGATGACAACGCTGTG 14473 28 100.0 32 ............................ GCCCGGTGTCGGTCATCACCCACACTCTGCTA 14413 28 100.0 32 ............................ AGCCCATTACCTGATCGGCGCTATCATCCGCA 14353 28 100.0 32 ............................ AATAAACTCAGCTTTGGTGCGGGTGTTAGCCA 14293 28 100.0 32 ............................ CTGAGCCGTTTAATTGAGTGTGTTAATCGTGA 14233 28 100.0 32 ............................ TTCCAGCGCAGTACCTTCGCGCCTGTCGCCCG 14173 28 100.0 32 ............................ ATCATCACCAACAGTGACTTCACTCTGAGCTT 14113 28 100.0 32 ............................ AGTAGCGCTGCGCAAGTACATAGTGGCCGCCA 14053 28 100.0 32 ............................ GAGCTTGTTCACCACATCCATCGCCAGCATCG 13993 28 100.0 32 ............................ CTGAGCTGCCGCCAATGATGGCTCAACAAACG 13933 28 100.0 32 ............................ TTTCTCCGCAGGTGAGGCATAGATGGGTTGAT 13873 28 100.0 32 ............................ ATCAACGACGTACACGCCCTTATTTATGATCT 13813 28 100.0 32 ............................ TGGCCTACGCTTCCCCAAAAAGTCATACCCAT 13753 28 100.0 33 ............................ CATTGATTTTAGTTAGTCCTGTCAGCGGGCTGT 13692 28 100.0 32 ............................ TTCATGGTGGGCAGCAACGACACATCACCCGC 13632 28 100.0 32 ............................ TGATGCGGATCACTCTGACCAAAGTAGCGCGT 13572 28 100.0 32 ............................ AGATACGGTAGGGAGCCAGATTTAAATCACCC 13512 28 100.0 32 ............................ AGCATGAGCAGACGTGATAGCACCGGCGAGAA 13452 28 100.0 32 ............................ AGTACGCTCTTCTCTCCGGGAGGCGATACAAA 13392 28 100.0 32 ............................ ATGCGCCGGGGCCAGAAATTGGCGCGTGGTCA 13332 28 100.0 32 ............................ AATACGGTGGCGGTAGTACGGCGATACTGATC 13272 28 96.4 32 .....G...................... TGCCCGACGGCACTGACGACCGCCGGGGCTGG 13212 28 100.0 32 ............................ TCAACGGCATGCCGATCACCATGCGGCCAAAA 13152 28 96.4 32 ....................T....... TGTAACAGGCTTTCGATCTCCATCACTGACTG 13092 28 100.0 32 ............................ TTTGTCAACTACATGCATGTGCAAACCTTCAG 13032 28 96.4 32 .............A.............. ACAGCCCGCGCTCGCCGCTTTCCACTGCGACC 12972 28 100.0 32 ............................ ATTGAGACACGAAGATGTCATTAACAGATACA 12912 28 100.0 32 ............................ TGTAAAACCACGTATTCATATCTCACCCGTAA 12852 28 96.4 32 ......................A..... GCACGCCAGAGGACTACGCAGCAGCAGTGATT 12792 28 100.0 32 ............................ GGACGGCGTGAGGCTGTATGTCTGCCGCTCGG CCGT [12779] 12728 28 100.0 32 ............................ GAACGCCACGCAGCACAGGCCCTGATTGATTA 12668 28 96.4 32 ..........C................. ATCCTTTGTGGAGATATTAAAGGGGATGTCAA 12608 26 92.9 30 ......................-.-... GGACTTCATTTCTGTTTTTGGCACGTTGCA 12552 28 100.0 32 ............................ TGAGAACAAGGCGAAGCATCCACACAACGAAC 12492 28 100.0 20 ............................ ATGAAGCAGTTGATCGGGAA Deletion [12445] 12444 28 78.6 0 ..........CC....C.C...CT.... | ========== ====== ====== ====== ============================ ================================= ================== 44 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCGCGCTCGGTAAACTCGAAGAGAGCCGATGGCGAGCGGGCTTGAATGATTACTGTCGTGCGACGGCGATCCTGGCGATACCCGCCAACACTGGCTGGCGCGTGGTCAGCCGTGTGCAGGTAAAAAGCAGCGTTGAGCGTCTGGTTCGTCGTTCATTACGTAAGGGCTGGATAACTGAAGAACAGGCGCAACAGCGAATAGCGGAAGGGAAGGACAAGCGTTGTCATTTGCCATTTTTACCGCTTAGAAGTTTGTCTACGGGTCAGAGCTTTAAGTTATTTATCCGCCATAGTGAAATACAAACGGCACCAGTAAGTGGTTCGTTTAGTAGCTATGGCCTGAGTGACACGGCAACAGTACCCTGGTTTTGACCCTTTTTTTCGTGATTTTATAACTTGTTGATTTTTAATGGGTGATAGTGACGGTCAGAAAAAAGGGTTTAACGCTTGAAACGGGGGGTTATATAACAGGATCATAGGGATAGGTATTTTAGGTTCCA # Right flank : ACCCTGCTTACCTCAGTATCCACAACTATTCGTTCACTACCTATTCCATTGCCGATTCGGTACAGGCACCCATTTTTTTGCCCCGTCTGGCTTATCACCAGGCGGGGCATTTTTACGTCCGTACCCGCTCAACCGTCTCCTGCCAGGCTTGCCAGCGGGTCTGCAGTCGGGCGTGGCGCGCCTTATCCGGGGTAAAAGTGACATGCTCCGGCAGATACTGTCGCAGCTGCGCAGTAGTCAGGTTAAACAGCGCCTTACGGGCCAGCAGGGCGGCCCCCATGGCTGAGAGTTCCGGCACGTCGCTGCGCATCACCGGGCAGCCAAGCAGATCCGCCTGGTACTGCATCAGCCAGTCGTTTTTCGTCGGCCCGCCGTCGACCATCAACGCGTTCAGCGTAAAGCCCGGATGGACGCGCACCGCCTGCACCACGTCAGCAATCTGATAGGCAATTGCCTCCAGCGCCGCACGGATCAGGTGCGCCCGCTTCACGCCCCGGCTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //