Array 1 1509057-1509624 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080518.1 Pseudomonas aeruginosa strain YY322 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1509057 28 100.0 32 ............................ CACCGCCTCGCAGTTGCAGAATTTGCTGCACA 1509117 28 100.0 32 ............................ TGACCGAACAGGAAATCGCCGAGGCGCTCAGC 1509177 28 100.0 32 ............................ ATGGTGACGCTGCACGACGGCCGCCAGGTGGC 1509237 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 1509297 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 1509357 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 1509417 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 1509477 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 1509537 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 1509597 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAATAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2870988-2872271 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080518.1 Pseudomonas aeruginosa strain YY322 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2870988 28 100.0 32 ............................ TGCAGGCCATCTTCGCCAACGAAAACGCCGAA 2871048 28 100.0 32 ............................ GCAATGAACGCCCATACCGGCGGCGCCATCGA 2871108 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 2871168 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 2871228 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 2871288 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 2871348 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 2871408 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 2871468 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 2871528 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 2871588 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 2871648 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 2871708 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 2871768 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 2871824 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 2871884 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 2871944 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 2872004 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 2872064 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 2872124 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 2872184 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 2872244 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCTTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2882435-2881146 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080518.1 Pseudomonas aeruginosa strain YY322 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2882434 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 2882374 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 2882314 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 2882254 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 2882194 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 2882134 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 2882074 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 2882014 28 100.0 32 ............................ ATCAGCAACAACGGTCACGCGGGTTCCCTGCT 2881954 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 2881894 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 2881834 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 2881774 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 2881713 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 2881653 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 2881593 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 2881533 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 2881473 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 2881413 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 2881353 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 2881293 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 2881233 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 2881173 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //