Array 1 140719-140901 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJXR010000005.1 Schaalia sp. Marseille-Q2122 strain Pus Sample, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 140719 37 100.0 36 ..................................... CGTTAAGACGACTAGCGGTAGTGAAATGCCGCTCAT 140792 37 100.0 36 ..................................... TCTTCCAGTAGGATTTTTCCCAATTTGTGAGTTCGC 140865 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 GTCAGAAGGCTCCTAGCGCCATAAGGTGCATTGAGAC # Left flank : ACGGGTCACCTGGTGCCATCTGACATACCCACCAGATCATCAGGAGAATCCGCCTGAGGGTGCACTGCATCCACCACAGCGCATGGTCGCACAGCACCGGATTTCTTTGATGCCTTCAAAAAATCATCGCTCGCACACTACAACGCCACACCACGAGTGACTGAATAATCTGTCGACACCTCCCAGCCACCACTAGGCAGAGGTCACACACGGTCGGCCTTGCTTCACATCAGGAATCACCGCGACTTGGATTTCTCACGCGTTGAGAGCAAGACGGTCGCGGGCGTGGGATAAGTTGTCAGACAAGGGGACTTTTCCGCATGTTTACGTCGGCAAGTCGGTTCCAGAATCGCCAAAAATGCGATCGGCGGCGCTATAGCGTTGACCTGGGATTATGTGCTTGAATGGAGGGTGTTCGAGCCTTCGTCAACACCCCATTTTTGGTCGGCGGCGCACACGCAAGTAAAGCCGCAGGTCAGACGGGGTGAAAAACACGAGGA # Right flank : CTGATCGCGTGCGATCGCATCGTAGCCTCCTCTCTGGTGTCAGAAGGCTCCTAGCGCCACCCCACGCCCTCTCATCGCAATGCAATCGCTCCTCAGACCGCCGAAGACGTCAACATACCTATCTGACTCCACATAAGGGTGTGTCCCAGACGCTCAGCGTCTGGGACACACCCTCTCCAAGATTCAGCTCTGAAGCTCTGGCACTACGTCATGATCAGCGCAGCGACGAATCCACGGCCTCGAAGATCGCAGCAGCACGAGCATCCGTCGCCAGATCCTCAATGTAGATCTCCCTACCATTGCCGTCACACAGGGGCACGCACCAGTTCGGGTACTCCGTGGAGGTACCCGGCAGGTTCTGCGGGCGCACATCGCCCACAACATCCACCAATGACACACCCACCAGCGCCGATGGGGTTGCAGCAGCGTAACGGTGCAGGGCGACGACGACCTCGTCAACTGTGGGGGTCTGAGCCTCCAGGAAACCGTACTCGCGCAGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCTCCTAGCGCCATAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 31886-31559 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJXR010000003.1 Schaalia sp. Marseille-Q2122 strain Pus Sample, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 31885 37 100.0 35 ..................................... ATGCGGCCGTCAGAGACGGTGTGGGAACCTGAGTC 31813 37 100.0 36 ..................................... AAGGGATATCCCGAGACGATCGGGCAGGTAGCGTGT 31740 37 97.3 35 .....................C............... GTGTACCAAGTTGCCTTGGTGCTTTCGACGCACTC 31668 37 91.9 36 .......A.....C.......C............... ATGATTGTCGCTACGCTCAGTTGGCCCAGAACGGGG 31595 37 91.9 0 .....................C.........C...G. | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 96.2 36 GCCGGAAGGCTCCTAGCGCCATAAGGCGCATTGAGAC # Left flank : GGCTGGCGGGATCCTTGGCCGTTCAAACCCCTCGCAGCAAGGAGAGTGGAACGGTGCTACCCATGCCAACACGGCTCATCAATGCCATTGAGGCTCGCATCACCTGACGTCGGCGACACTCAATAATTTGCCTTTCCCAGCGCCTTCGATCAACGAGCTCACCCGCAAAAAGGCTTCCCACCCGCCTTCCTTCTCACTTGTGCGATACCCCTAGATAAGGTGGACACCTTCGAAGAATCAGAGGGAACTGAGCTTCTCACCTAGCAAGATACGGATGCCGACAGAGAACGCTTAGTTGTCAGACAAGCAGACTTTTCCGCATGTTTGCGTTGGCAAGTCGGTTCCAAAATCAGCGAAAATGCCATCGGTGGCGCTATAGCGATGACATGCAGTTATGTGCTTGAATATAGGGTGTTCGAGCCTTCCAAAACACCCTATTTTTGGTCGGTGGCGCAAACGCGAGTAACGCCGCAGGTCAGAAGGGGTGAAAAACACGAGGA # Right flank : CAATCAGCCACTTTTACGGTGGATGTCATGCGCCAGAGACGGTTCCCCCAACACCATAAAGCCCATCTGAGCCTCACCCAGCACAATGCCAAAATGCTGTTGATCTGACATTAGATCGATGGCGCTTTGACAATACTCCTGCTACGACCACAAAACATCAGTGGGGAGGTTCGATGGAGTTTGAATACGACTCAGCCAAAAGCCGCTCCAACAAGATCAAGCACGGTCTCGACTTTGACCAGGTGCAGCAACTTTGGGAAGGACCAACCCTAGTCATCCCCACCTACGCAGGGAGCGACGCGGAGCGTTTTCTTGTGATCGGCCTCATCGACGGTCTCCCTTGGTCGGTGATTGTTACAGAACGCAATGGGCGCACACGCATCATTTCGGCTCGCCGCTCTCTCCTGAATGAAGAGGAGCTTTATCGTGACTACAGCAGCAGACGGTAAAACCAGGATCTCCACTGAAGAGTTTGACCGCAAGTTTGAGGAAGGAGAGGA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAGGCTCCTAGCGCCATAAGGCGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 37587-33060 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJXR010000003.1 Schaalia sp. Marseille-Q2122 strain Pus Sample, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================================ ================== 37586 37 100.0 37 ..................................... CTTGCATTATGAGCGTTGCCCACGGTTGTTTCAGCGT 37512 37 100.0 35 ..................................... AGCGCTCAAAGTGGGGGTGTGACCTCCGCTCCGCG 37440 37 100.0 37 ..................................... TGGTTCTCGGTCTGCTGGTCAGTCATTCTCTGTCTCC 37366 37 100.0 36 ..................................... CAAGCACGGGTTCAACATCTCCGGCGTGGTTTTCGA 37293 37 100.0 35 ..................................... CCTCGTAGTCGTCGACGGTGGGGCGGGTCTTCCAG 37221 37 100.0 38 ..................................... ACTGCCTCATCATGAGGATCAGCGACTGGATTTCGCTA 37146 37 100.0 34 ..................................... TCGTTCTCGTAAGCATCCAAGAGCGGTGCTGCCG 37075 37 100.0 34 ..................................... GTGTGGCCTGCCGCGGTAGGGCAGCCGCTTTTAA 37004 37 100.0 37 ..................................... CGCAAGGCTGGTGGAGTTATGGTCCCAACCGAGAGCC 36930 37 100.0 36 ..................................... TCAACAGCGGAGGTATGGGAGAACTTTTTGGTCAGG 36857 37 100.0 34 ..................................... ATCCAGAGCCTTGACGTTGCCACGCGGCTGTTGT 36786 37 100.0 37 ..................................... TGAGCATGGTTTGGCGTGTGGTGGTGGTGTCCACAGT 36712 37 100.0 35 ..................................... CTGGGTGGTCGAGACGTACCAGGAGACGCTAGAAA 36640 37 100.0 34 ..................................... TCGGTCAGAATTTCATGAGCGTCCATTTTTCGAA 36569 37 100.0 37 ..................................... TACCAAGCTCTTTCATAACTGTTGCAAAGGCTTCCCT 36495 37 100.0 39 ..................................... CACTCTTCGGAAAAGCACAGGAAGACCACCCTCTTAGGG 36419 37 100.0 36 ..................................... GCGCGCCATTGGTGCTGTTGTGAAAAAGCCGGGATC 36346 37 100.0 35 ..................................... TGACTCAGGGATCCTCCACGTGCCCTTCACCGTGC 36274 37 100.0 35 ..................................... TGGCCGCCAACGTCGCCCCGGCTTTGGCGTTGGAG 36202 37 100.0 36 ..................................... AAGGGTTCCGATAGCAGGAAGGGCATACTTTGTTGC 36129 37 100.0 41 ..................................... TCCCACGACCACAGTTGTACGTGCTCTGGACTATCTACCAG 36051 37 100.0 34 ..................................... AAAGCAAGAAGCTGTGTATCCCCGTCCCCGATGT 35980 37 100.0 36 ..................................... CGCTCACTCAGGCGACCTAGGAGGGTCGATTGCTGC 35907 37 100.0 33 ..................................... CTAGAGCTCTGTTGTGCACGAATACCGTTTACA 35837 37 100.0 39 ..................................... GGGAACTCCAGATCGAGGTGCAGCAGCACCGACTTGAGA 35761 37 100.0 37 ..................................... GTTCTGAGTGGTGTATTCGGTGTTGAGCTGACGGGTT 35687 37 100.0 36 ..................................... GCGGGAACGTCTGCGGATTCATCGGCTGGGAGCTCA 35614 37 100.0 36 ..................................... ACGAAGGCCGCGAAGGAAGAAGTGGCGGAGGCGCGC 35541 37 100.0 37 ..................................... TTAGGCTACCGTTCGTGTGGGTGGTGGTGAGGTGACG 35467 37 100.0 37 ..................................... TTAGGCTACCGTTCGTGTGGGTGGTGGTGAGGTGACG 35393 37 100.0 37 ..................................... CCACAATCGCTAGACCAGCCAACAGAGCGACAGCCTT 35319 37 100.0 37 ..................................... GCAGGGCCTCAGCGGTTGCCTGCTGGACGGCCTTCAC 35245 37 100.0 37 ..................................... GCTAAAAGCCTGCGCCGAATATGCGCCACGGACGTTC 35171 37 100.0 35 ..................................... GATTTACGAGCCTCACTCCATCCCAGCTCATCCCA 35099 37 100.0 36 ..................................... CGCTGACGCGCCTCAACCCCAACTCTGGTGTGTTGG 35026 37 100.0 38 ..................................... GCGCCATTTCGATGAAGATTGCGCGTGGTGTTGTCATG 34951 37 100.0 35 ..................................... GCCGCTCCCGCGCTGCCGTAGCACGCGCGCTAGGT 34879 37 97.3 35 .........................T........... AGAAAAATCGTAGACCGTGGACCCTTCGGGCTTCA 34807 37 100.0 37 ..................................... ACCCAAGCTGAAGCTGTCGCCCAGCTCCGCGCTGATG 34733 37 97.3 38 .............T....................... TTGACCGTGCGCGCCGCGAGCTTGGAGAAGTCCGGCAG 34658 37 97.3 36 .............T....................... AGCCCGCCCTGCACGCCGAAGATGCGGTTGAATGTG 34585 37 97.3 36 ...................................G. AGGTATGAACGCGAATCTCACGCCTGACGCGGCGGT 34512 37 100.0 36 ..................................... CCGTGAACGAAGCCCTCTCGGAGCCCATCTCCTTCA 34439 37 100.0 38 ..................................... GTCGGAGGAGGTGGGCGTCTGACACTTCGCGCCCCTGC 34364 37 100.0 37 ..................................... AAGCAAGAGTTGTTCTTCTTCCGCGAAGACTTGCCTG 34290 37 100.0 39 ..................................... GCTCTTGACAGCCCTACTCACCGGTCTTGATACCAAGCG 34214 37 100.0 36 ..................................... AAATCAACAAACAATGTGATCGTTACTAATTCCCCT 34141 37 100.0 37 ..................................... GAAGAAATGCCCCTCTTCTACGTGCTCATCGTGCCAT 34067 37 100.0 33 ..................................... GTCATTGCCTACCGCGAAGGCATGTTCTGGGCC 33997 37 100.0 38 ..................................... AGGTCGAATATCTCCGCCATGTGTTGCCAACTGTCGTG 33922 37 100.0 35 ..................................... CTTGTCGGATGCGGCTTTGCGGACGATGGTGCGGG 33850 37 100.0 36 ..................................... TCGCAGCCCGAGCACGTCACCCATTCCGAGATCCCT 33777 37 100.0 40 ..................................... GCCATCTGCCGCATCCTCTAGTGCGCCGATGACCATTTCA 33700 37 100.0 36 ..................................... TTCACCGACCCCAACGTCGTGGCCGGTGAAGTGGCC 33627 37 100.0 35 ..................................... CCGACGAGGCACGCCTCGTGAAGAACTGCGAGGAC 33555 37 100.0 36 ..................................... CATCTTGGAACGCTCCACGAAACCAAGTGCCTTCGT 33482 37 97.3 36 .............T....................... TTCTCACTCATAGTGCTCGCCCCCCTTGATTCTCGG 33409 37 100.0 34 ..................................... CGAGGGGGTGCTCTTCGTCTCCGCTGATGTCTGC 33338 37 97.3 38 ................T.................... TCCGCAAACCCATCAAGATCATGCACCTGGCCCGTCAC 33263 37 100.0 128 ..................................... GGTCCAGTTCCTCATCAGTGATGAGAACGCCAGGCGCGCGCCAGAAGGCTCCCAGCACTTTCGTCGAAACTCTGTCTTATCGACAAAACTCCGGGCAACTCGGCTCTATCTCGTCAATACGACAGAGT 33098 37 73.0 0 T....C.T.A.GA...................C.CTT | C,G [33090,33092] ========== ====== ====== ====== ===================================== ================================================================================================================================ ================== 61 37 99.3 38 GTCAGAAGGCTCCCAGCGCCATAAGGTGCATTGAGAC # Left flank : GATTGATGACCGTGAGGATGTAGTGCACATTTATCCCTTGTGCGCACATTGTGAGGAGCGGGCCGAGGTTCACGGGGTTGGCGTGGCCCTGGATGATGTGGGGTTTTGTCGAGGGCTGTGGTAGGTGGGCGGTGATGGTTGCTGCTGCTGGGTGTTGTTGGGTTGTGGTGTTGGGTTGCGAGGTCGGCTTGGCGGGGGTTGGGTTGCGAGGTCGGTTTGGCGGCCCGACTTGCAGGGCTGGGTTGCGAGGTCGACTTGCGGGGCTGGCGTTTTCTGTAATTTTCAGTACGACGAGGGCGAGGCGAGGGCGACTTTTCCGCATAACCTCGTTCAAAGTCGGCGGAGAACAAGCGAAAACCGCCGTCGGTGGCGGGGTGGTTCTGACCTGGGGTTTTATGGTTAAATAGGGCCTATCAGAGCCTGTTGAAAAGCACTGTTTTTGATCGGTGGCGGAAATGCTTGTAAAGCCGCAGGTCAGAAGGGGTGTTTTTCGGTAGGGG # Right flank : GACATGAGTAACTGCCGAGCGACGGATCATCCACGAGCTGCAGCGGTGTTCACGGGTAAGCTCTAACTTCTAGCGACTCACCCTTCCATACAACTTGTACATGTTGTACGGTTGATACATGGCTACGGTTACTCTGTCCCAATTCCGCCAAGAGCAAAGCACATGGCTGGCTCACGCTCAGCGTGAGCCTGTCACCATCACCTCGCGTGGCGCAACTGCGCGAGCGGTGGTAGTTTCACCTGAACTTTTTTCACGTGCCATGGAAGCCCTGGAAAATCAGCAGGACATAAAGGACGCTGCCGCCGCGCGCATGGAGACTGGTCGCATCTCGCATGCTGACGTCACGCGTGAACTCGGATTCTAACCCTTCGCGATGTACCAGGTCTCATACACCCCTTCAGCAGTCAAGTACCTACGTAAACTTGACCGCTCAACCCAAAGGCGTCTCCTCAATGCCATAGAGGAGCTCGCCAACGATCCCACCCCTCCCAGAAGCATCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCTCCCAGCGCCATAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 108052-118751 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJXR010000007.1 Schaalia sp. Marseille-Q2122 strain Pus Sample, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 108052 29 100.0 32 ............................. CCGCGTTGAGCTTTGCGGTTGCGTCGGTCGGC 108113 29 100.0 32 ............................. ACTACCCGGAACTTCCTGAGCAGGTGTGGGCT 108174 29 100.0 32 ............................. CCTGCGGGGATGACACCGATGTTGGAGTGTTG 108235 29 100.0 32 ............................. AAGCCTCGCCGCGTCGCCTGCGAGTTGAGCGT 108296 29 100.0 32 ............................. CGGTTGCTCGGTAAGACCGACTGGACCCTCGA 108357 29 100.0 32 ............................. ACCTACCAATCACCGCGTACAGGCGCGGATAG 108418 29 100.0 32 ............................. AACGCGGAATTGCTCGGCCGCGAATGGAACCA 108479 29 100.0 32 ............................. GTCTGGACCTCGCGCACGTAGTCGACATCGTA 108540 29 100.0 32 ............................. ACTTGTTGGGTTGGTCGTTGCGGGTACACGGC 108601 29 100.0 32 ............................. GTTTAGCGCGGCTTTGATGATACCGCCGATAG 108662 29 100.0 32 ............................. AAGGGCGATCGCCCTGCTCATAGGTCTGATCG 108723 29 100.0 32 ............................. CCGTCAATGATGAGCCGACCGTTATCGGTGAG 108784 29 100.0 32 ............................. TGCTCAGCCTCCAAGCCCACTTCCCGGTCCGT 108845 29 100.0 32 ............................. TCACCGTCCACATGTACGCCTGGTCAAGCGAG 108906 29 96.6 32 ............................T GCCAAACATTCTCGCAATGGTCTTTGCATCAA 108967 29 100.0 32 ............................. TGGGTCTCCCGTGGCTTGGTCGCGTCTGTCAA 109028 29 96.6 32 ............................T GACCGAGGCTCTAGCGGCGCTGGGCGGACTGC 109089 29 96.6 32 ............................T GGGCGACTGCTCATGAGGCCCGTGTTGAGTTC 109150 29 100.0 32 ............................. GACCGACATGTCAAACAACCGTAACCGTAACC 109211 29 100.0 32 ............................. GAATCCCCCGGCGCGCCCTTCCGCCTCCAAGA 109272 29 100.0 32 ............................. ACGTAGGCGGTGGCGCCGAGTAGGAACATGAA 109333 29 100.0 32 ............................. CCATCCGAGAAGTGATTGACTGGATCGACTGG 109394 29 100.0 32 ............................. TGAGCAACGCTTCTCGACCTCAAGCTGATCAG 109455 29 100.0 32 ............................. ACTCCGACGGGTCACCGTCCGGATACGCCAGT 109516 29 100.0 32 ............................. GCTTGGGCTTACACAGGTGGCGCTGGCAAAAG 109577 29 100.0 32 ............................. GCCCGCCGCGTGCGCGGGACTCCATCCGGCAC 109638 29 100.0 32 ............................. GCACCGCAGTCAACGCTATCGGCACCCTGAAC 109699 29 100.0 32 ............................. GGCGATATCGGCAACATGCCTTTGCCAAGGCA 109760 29 100.0 32 ............................. CCGTGAGTACGCCGCCGCGTGCCAGTGGGTGA 109821 29 100.0 32 ............................. GTGCCGGGCTGAGGGCGACCCTCAACGACGCC 109882 29 100.0 32 ............................. AGGTGCGGCGTCGACTCGAACGCTTCAAGAAC 109943 29 100.0 32 ............................. CTATACCGACGCTGACGGCGACGGCCTCATTC 110004 29 100.0 32 ............................. CAAGGTTCAGCCTGATAGGCTAGAACCAACGA 110065 29 100.0 32 ............................. CTTCAAGATCAATCAGCTTGTTGGTAGTCATT 110126 29 100.0 32 ............................. CTGCGTGATCTGGGCTGGATTCTCCCGGCCTA 110187 29 100.0 32 ............................. GCGTAAGAGCCGGGGCATCTGTCGAGTCCTGG 110248 29 100.0 32 ............................. GCGAGCCGACCCTGACCACGCATGAAGAGACC 110309 29 100.0 32 ............................. CCTCAAGATCAATAGTAGCCATTGTAATATTC 110370 29 100.0 32 ............................. ACTTAGGGTGTACTGGCAAATGGTTGCCGTGC 110431 29 100.0 32 ............................. GCCTCGTGGACGCTGATTGAGTCGCTGAATGC 110492 29 100.0 32 ............................. CGCTCAAGCAAGGTGTCACCCCTATTTTCGGT 110553 29 100.0 32 ............................. CGGCCTCATTCGCGCGGCCCGCCTCCGTCGTC 110614 29 96.6 32 ........T.................... GTCAAGAACGTTGGCGTAGGAGCGCTCGATAA 110675 29 96.6 32 ............................T TTGGCGCAAAGACCCTTGAAACCGAATTTGTC 110736 29 100.0 32 ............................. TCCATCAGCTTCGAGGAAACCACCGAAGGCAT 110797 29 100.0 32 ............................. GTGGCATTTCCTTCCTCATCCACCAGGACGCT 110858 29 100.0 32 ............................. GGGAAGCGCGCGCCTTCTTCGTCGCCTGCCTC 110919 29 100.0 32 ............................. CCCGCACGGGCAGCAAAACCTCGAACGTTAGC 110980 29 100.0 32 ............................. CGGCCTCATTCGCGCGGCCCGCCTCCGTCGTC 111041 29 96.6 32 ........T.................... GTCAAGAACGTTGGCGTAGGAGCGCTCGATAA 111102 29 96.6 32 ............................T TTGGCGCAAAGACCCTTGAAACCGAATTTGTC 111163 29 100.0 32 ............................. GCGGTGGCGGCATGAAACGTATTGAGAAAATC 111224 29 100.0 32 ............................. ACGGATTGAGGTAACGTTCCATGTCTCACACC 111285 29 100.0 32 ............................. GTCACGATGTCCTTCTTGCCCTTCAGCCCAGA 111346 29 100.0 32 ............................. CGCCGTCAACCAGCGCAGTGCGGAACTCAGCG 111407 29 100.0 32 ............................. GCTATGGCTGAGGCTGAGGAGGCTGAGACGCG 111468 29 100.0 32 ............................. GAGGAATTTTTATGGGCGCTCATGGCGCTACA 111529 29 100.0 32 ............................. AGTCAGGATTCACAGCGGAGTACTTACCGTCA 111590 29 100.0 32 ............................. TGCTTCATCTTGCGTCAACCCCTCTCGCATAC 111651 29 100.0 32 ............................. GTCCCGCTGCTGGGACGCACCCTCCTGGTCAA 111712 29 100.0 32 ............................. TGGACCGGACGGAGGTTCTCTATCTCGTCACC 111773 29 100.0 33 ............................. GGCCAGGTGGGCTGGGATCCCGAACATACGAGC 111835 29 100.0 32 ............................. AAGCCCTGGTATAAGAGGACGTGGTTCATTGT 111896 29 100.0 32 ............................. AAGCCCTGGTATAAGAGGACGTGGTTCATTGT 111957 29 100.0 32 ............................. GCTTGCAGGACGATCGACGCTGCAGACACGGC 112018 29 100.0 32 ............................. TCATTAAGCCAATCGGTGGCGCAGACGCTGGC 112079 29 100.0 32 ............................. AAACGCTGGAACGAATCCAACAGTCACGCCAG 112140 29 96.6 34 ............................T GGTTGTAGGAAACCCCCCCCACCGCTATGGGTGG 112203 29 100.0 32 ............................. CGCGGCCAGGCAGACCGTGAGAGACCTCCACG 112264 29 100.0 32 ............................. AAGTCGCGCATTTGTTCGGTGCGGTTGGTGGT 112325 29 100.0 32 ............................. AAGTCGCGCATTTGTTCGGTGCGGTTGGTGGT 112386 29 100.0 32 ............................. CGTTACAAATCACCCCCGCTGATCTGCTGCTA 112447 29 100.0 32 ............................. TGTAGGGCCTGTTCGGCGGTAAGGGCTTCTTT 112508 29 96.6 32 .............G............... GAGGCCGGCAAGTGATTATTAAGGTGTATGGC 112569 29 96.6 32 ............................T GCACAGATCATCGACTGACAAACACGGTTAAG 112630 29 100.0 32 ............................. AGGAAAGGCAAAGGGCCCACCTCCAAATCCGA 112691 29 100.0 32 ............................. CGTCGCCGCAAACAGAGGAAGGCCACCAGCCA 112752 29 100.0 32 ............................. ACGCTTGGCAGAAAGTGGAAGAGGCCGCCAAG 112813 29 100.0 32 ............................. TGCGCCATCAGGTTCAGGGAGACTCCCGAATG 112874 29 100.0 32 ............................. CTCTTAATGCCTCCGACAACATTGCTGGCAAT 112935 29 100.0 32 ............................. GTCGCGGCGCCATTCATCGCGTTGGGCGGCAA 112996 29 96.6 32 ............................T GCTCGCCCCATTCAGGCAGGGCATCGCCAAAG 113057 29 100.0 32 ............................. AATTCTGGGATCTGGAGATTACCACTGCGGCG 113118 29 100.0 31 ............................. ATCTTGGTTTTCGCTTTCAGCGGTAGCTTGA 113178 29 100.0 32 ............................. CACTCGGCCTCCAAGCCGACTGCCTAAAATTC 113239 29 100.0 32 ............................. AATGGCTCCCCACCATCGCATTCAAAAGGGTC 113300 29 100.0 32 ............................. GAATATGAGTCCAAGACGCGGCTCTACATCGT 113361 29 100.0 32 ............................. TCGCCGGTGGCGCTGGCAAAATCGCGGGCACT 113422 29 100.0 32 ............................. CCGCCTACCCCCTCCTCTTCACCGACGGAATA 113483 29 100.0 32 ............................. CAGGTTTGATGTGATGATGAGTGAGCCTTGTT 113544 29 100.0 32 ............................. GTGTTGGAGGAGTCGTATCGTGCGTTGCGCGG 113605 29 100.0 32 ............................. GAGGGCGTCAGTCATGCGACGCGTGGGGCCAC 113666 29 100.0 32 ............................. GTGGCGTAGTCGTCGATGAGGAGGGTGAGGGT 113727 29 100.0 32 ............................. CGGTAATCTCATGCCCCTTACGGGATGTTCAC 113788 29 100.0 32 ............................. AACGGATGATCTCGACGATCCTCGATGCTGCG 113849 29 100.0 32 ............................. CAGTCGGAGGTTGGATTAGCGCCAGGAGCGAG 113910 29 100.0 32 ............................. GCTTCTCTATAGGCCGTCTCTGTGGCGGGCCG 113971 29 100.0 32 ............................. CGTTCTCGCCCTGCGCTGATTGGTACGCAGTG 114032 29 100.0 32 ............................. TCACCTGCAAAACCGGCGAAAACGACTACAAA 114093 29 100.0 32 ............................. GTCGCCACCCTCATTGACACCCTAGGCCTCCA 114154 29 100.0 32 ............................. GTCGTGCAGGCTCTGCCTCAGGTCGCGAACAC 114215 29 100.0 32 ............................. TGACCAAGTGCTCCTTGGTCCCCTCCGTGTCC 114276 29 100.0 32 ............................. ACCCGCATGGAGTCCTACAAGTCCGCCCAAGA 114337 29 100.0 32 ............................. ACGCCATCATGAAAGCCCGTGATGAAATGGGC 114398 29 89.7 32 ..........................GTC CCCACCATGAAACGTTACCCATTAACACAGGC 114459 29 100.0 32 ............................. GCCTCGTCAATCATGACCAGCTCGGGGGTGTA 114520 29 100.0 32 ............................. GCCACGAAGTCGATGCGGGCGCCGCGCTTGGC 114581 29 96.6 32 ............................T TCATCCTCCACCCCACGCAATTCAAGACCCTA 114642 29 100.0 32 ............................. AATGGCTAAAAGAATCGAGCACCCACATGCCC 114703 29 100.0 32 ............................. GCCCTCAAATGATCGGCCCTCTCATGATGAGC 114764 29 100.0 32 ............................. CGGGGAATCAGGGTCGCCGACGGCGCACCCAC 114825 29 100.0 32 ............................. GTATGCCCCCGGCTTTTGCGTGTTTGCGCAGG 114886 29 100.0 32 ............................. GGGAAAGGTGGGTCTTCGTGTCCCCCCGGTCC 114947 29 100.0 32 ............................. CCAACTGGCAGTTGGTTGAGGACTACCTCAAT 115008 29 100.0 32 ............................. CAATGGCGAGAATACGCCAACCCCACCTGCGA 115069 29 100.0 32 ............................. ATGCGCGTAAGCGTTGGAAGCAGATTACCGCC 115130 29 100.0 32 ............................. CCCGCATTTTGCAGGGCAGTGAGCTGCTCGGG 115191 29 100.0 32 ............................. AGTGTGTTTTTCGTGCTGTGGTGGCGATCGTG 115252 29 100.0 32 ............................. AACCCCAGAGTAGTGAGTTCATCGGCTCTGAA 115313 29 100.0 32 ............................. ACCCGCCTCCCGCGTCGCTAATCGACGCCACC 115374 29 96.6 32 ............................T TGCTGCACCATGAGGCAGAATCCGTCCTTTTT G [115391] 115436 29 100.0 32 ............................. TCCTTCGACTTCATCGTCGACGACATCGACAA 115497 29 100.0 32 ............................. CCGTGACTGACCGCCTCCCCGGCCACCGCCAA 115558 29 100.0 32 ............................. GTCGCGACCACTCCGGCCCCGCCGCGAAACGT 115619 29 96.6 32 .................A........... GGTTGTGCCTGACCCTGCAAAAGGATCCAACA 115680 29 96.6 32 ............................T TCGAGAGTGTTTTTCCGAGCTGCACCGAAGTA 115741 29 100.0 27 ............................. TGCATCTTCCCCGAGAGGGTGAGCAGA 115797 29 96.6 32 G............................ GGGGGTTCTCCGTTGTTCTGCTGCCAGGGGTC 115858 29 100.0 32 ............................. TGGATTGTCGGCATGGACGCGATCACTTTGCC 115919 28 96.6 29 ......................-...... CCCGCCCACCGTCCCGCATCCGCATCGTT 115976 29 96.6 32 ..........T.................. TCGGTCGAATGTTCGGCATTCCCGCCCACATG 116037 29 100.0 32 ............................. GCAAGCATCTGACACGGCCGGTAGGGCCTGAT 116098 29 89.7 32 ..........................GGA ATAAGCGGCGGCCGCTGTCTCTGCGGTTTCAT 116159 29 96.6 32 ............................T TACCACCTGAACGCATCATGAGACTATCGAGG 116220 29 100.0 32 ............................. GGCTACGGCCTCGACGTTGACGGCATCCTCGG 116281 29 100.0 32 ............................. CCGGGCGCAAATCGTTGCGGCCAATGTACGAG 116342 29 100.0 32 ............................. TGACAACGTGTGCTACACGGGTCTTAAGCCCG 116403 29 100.0 32 ............................. ACGTCAACGGCAATTTCACCGAACTTGACCGA 116464 29 100.0 32 ............................. GCCGGGAACCGCCGTCCCCCGAGGGACGTAGC 116525 29 100.0 32 ............................. CGGTTTGCTGAGGATGCACTGCGTTGGTTTTA 116586 29 100.0 32 ............................. CTTGAGCACGAGCCTGGCGATTACCCATCTGC 116647 29 96.6 32 ......................A...... CCTGGCGGCGGCGCAGACGCTGGCCGCGCCGA 116708 29 100.0 32 ............................. TGGGGGCAAGACATCGACAAGGCAGCACTCGC 116769 29 89.7 32 ..........................TTT GTGGGTGCTGACGGTCATGGACGCTCCCTCGC 116830 29 100.0 32 ............................. GACGCTCATGCGCGCGCTCCATTCGCGCCTTG 116891 29 96.6 32 ..A.......................... CCCTATCGCGCGGGCCAGTGCTGATTGATTGA 116952 29 100.0 32 ............................. TTTGCACGCATACCGACGTAGAGCCAGCTCGG 117013 29 96.6 32 .......................C..... CAGAGAGTGGGAGCCGGTGATCTGACGCAGAC 117074 29 96.6 33 ............................T GACCTTCATTGGTCAATTCCTTTCAGTGGGTTC 117136 29 100.0 32 ............................. GACTATCCCAACACCACCACGCCAATAACAGC 117197 29 100.0 32 ............................. CAAGCAGGAGTGAGCACCAAGACTATCCAGCG 117258 29 100.0 32 ............................. GCGGCCGCCATCTCCCACGTTTCGCCAGGCCG 117319 29 100.0 32 ............................. ACCCCGCGCTCGTGTGGCAATTCCGCACCGTA 117380 29 100.0 32 ............................. GTCGACCTCATCGCCACCCAGACCGCTACCCG 117441 29 100.0 32 ............................. GCGTGCAGAACGCGGTAATAACGTGCATTCAA 117502 29 100.0 32 ............................. AAGGCAGCCTCCCGCCTCATCGACGAACTCAT G [117524] 117564 29 100.0 32 ............................. GCGCCTGAAGGTTCGGTGATCGAGGCGCTCGA 117625 29 100.0 32 ............................. GCGTACACATCCGAATCAAACGCGCCCGCGCG 117686 29 96.6 32 .....................C....... ATCGGGCGTGGCCTGATCCCCGTCCAACACTG 117747 29 100.0 32 ............................. TCCCGCTGTGCGCCTTCGGGCATCATGTCCGC 117808 29 96.6 32 ..........................T.. ATCAGCCATGATTTCTAGGGCTAGCGCTGCCG 117869 29 100.0 32 ............................. TGGTGTGCCAAGTTGCGTATAGAGGTCGACAT 117930 29 100.0 32 ............................. AAAACACTGCCAGTCCATCAGGCTCTCCACTC 117991 29 100.0 32 ............................. ATGAGGAATGGGGCGACGGTTACCGCCGCTTC 118052 29 100.0 32 ............................. CGCATCCTGCACGCGCCGTCGGTGATGAAGTG 118113 29 96.6 32 ................T............ AACCAGCGCATCTACGGCAAGCGCCTGGGCCT 118174 29 96.6 32 ................T............ AACCAGCGCATCTACGGCAAGCGCCTGGGCCT 118235 29 100.0 33 ............................. CGCAGGATGGGGGGGGCACGGCCCGACGCTGGC 118297 29 100.0 32 ............................. TGGAGGCTCGCCCAAGGCCCATCCATGAAAGC 118358 29 100.0 32 ............................. CAACGAAGAAAAGAAAGCCTATGGGCCCCCAG 118419 29 100.0 32 ............................. GCGATAAGGTCCCGAACTTCCTGCACACCCCC 118480 29 89.7 32 ..........................TTC CCGTTCCTGCATCATGTTCCGAGGTAAGCCCC 118541 29 100.0 32 ............................. ATGGCGGTGAGCTTGCTCAGCCCCGAGGGGGC 118602 28 82.8 33 ............T.C..-.........TT TTCCCGCTCAGCATTGTTGGCACGGATCGCCGC 118663 28 86.2 33 .C..........T.C..-........... GTCTCTTGCCGCGCCTGATGGGGATGCCCACTC 118724 28 82.8 0 .....T....T.T.C..-........... | ========== ====== ====== ====== ============================= ================================== ================== 176 29 99.0 32 CTCGTCCCCGCACATGCGGGGGTTACCCG # Left flank : AGAGTGAGGTAGCCCGGTGTTGGTTTTAGTAACCTCAGCCGCTCCACCCGGATTGCGAGGGGAACTTACCCGCTGGCTTCTTGAGATTGCGCCAGGGGTTTACGTGGGGCATCTGTCTGCACGAGTGCGTGAGAAAGTCTGGGAATTGACTCAGGCGAACATACGCAACGGCCGGGCAATTATGGTTATCCCCGCGCGTAATGAGCAACGCTTGGAATTTCTGACATGCGGTGATGCCTGGGAACCCGTGACCTTTGACGGACTCAAGCTGGTCAGACGGCGAGAAAAGACCAGCGGCCAAAGGTCCGAAGAATCTGCTACATCCCGTAATTCGACCACACGGAGAGACACTGCTTGGTCGATTGCGGGCCGAAGACGGCACTTTCGAACTGGCATTGAGCGGCGCCCGAGTTCATGAGAAATTGGGTGTCATTTAGCCAAGTTGGCAAAACTCGCTGCTAACCTGGCGAGAGAAGGTTGGAATTCTAGGCTTTTTTAGT # Right flank : GAGGGGGCGCCTATGTGGCACGCAGGCTCGAACTCTTCCTCGCATGCGCGCAGCTACCTGAGGGATAAGCCGATACTGCTACCGGTCGAATGTAGCCCATCCCTTAGGTCTGGAAGGAGGATCTCTTTGGATCCTCAGGCTGAGAGTCGGCGCCAGCGTGGTGAGGGGTAGCGATTCGTGCGATTGTGCTCGGGTGGCGTGTGTGAAGCGGTGGGCGGAGTGCAGCTGAGCTGAGGATCGGGCTCCTCGTAGTAGACACTTACACGGAGTGCGCCTGCGCCCACGCTGATCCGATGAACCCTGTTCAGCCGGAGAATGATGGTCCGGAGCCTTTATCTGGCGTAGTTCAGAGTATTACGAAGGTCAACTATCTCAGTGATGCTTCAGCATCGCTAGAGATGAAGGGCGTGGAATTCTAAGGGGAACGCAGGGAGGTACCTTTTAGAGGCCGTCGGTGTTCGGCTTCCAGACGGCGCAGAAGTTCTCAACCGGAGGGGTGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACATGCGGGGGTTACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-41] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //