Array 1 429002-426515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKWX010000001.1 Clostridium algidicarnis strain CM002 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 429001 32 100.0 34 ................................ TAATTTTTTTATATTAAAACCTAAAGAAACTTTT 428935 32 100.0 35 ................................ TGTAGTTAATATAGGTACAGATGTAAAGGCTTTAA 428868 32 100.0 34 ................................ TGTAATATGTCTAGACGAAATAAGTAATTTAATA 428802 32 100.0 34 ................................ TACGTTGGGGGAAAAATAGTGTCTGATAAAGTTA 428736 32 100.0 34 ................................ TCTCTATTAATTTCTTTATCAATTTCAGATGCTT 428670 32 100.0 34 ................................ CTTTACGCCTGCTAAATATTTCGGTACATCAAAC 428604 32 100.0 35 ................................ ATTGACTAGGTTATTAAATATATCTTTTTGTTGTT 428537 32 100.0 34 ................................ TATTTTAATAGGTATTTTCATAGTTGCAATTTTA 428471 32 100.0 34 ................................ AAAAAATACCTATAAATAATTTAGAATTTAATAC 428405 32 100.0 34 ................................ ATAAATTTTGTTAAACGGACTAAACAGTCCACTT 428339 32 100.0 34 ................................ TGTTAATTCTATGCCTTATCCTTCGTCGGATACA 428273 32 100.0 34 ................................ TTGTTTTCTCTGTTTTTGCTTATAAAAAAATAAC 428207 32 100.0 34 ................................ TAGAAAAGTCACAAGATCCTTTAGCTAATATAGA 428141 32 100.0 34 ................................ TTATCCATTGTCCCAATTCTTTTATATACATATC 428075 32 100.0 35 ................................ CTAATACTTTAAGTAACATTTGGGAAGGTATAAAA 428008 32 100.0 35 ................................ TGACAAGGTTACACAAGGTGCTATAGACTTAACAG 427941 32 100.0 35 ................................ ACGTGAAACATTTTTCACTACGTCGAAGACATAGT 427874 32 100.0 35 ................................ TCTTTTTAATTTCATTATTTCTACTGTTTTTTTTC 427807 32 100.0 34 ................................ ACTTATTAAAACTGTATTATGTATGCTTAATTTC 427741 32 96.9 34 ........T....................... CTACGTATTGCATCATTAATCCCCCTTTGACACC 427675 32 100.0 33 ................................ TGTCAGATGGCTTTTTAATAAATCTACTATAAA 427610 32 100.0 36 ................................ GCTCGTAATGTTAGTCCTATTAGGTTGTAGGGTATG 427542 32 100.0 34 ................................ GCTCCCTTATTTTTTAATAAACCATTTTCCATTT 427476 32 100.0 33 ................................ TGTAGAAGCTGGTACAGCTGCAATGATGATTGG 427411 32 100.0 33 ................................ TTTTGCAGATGGAATAAGAGGATTATGTGTATA 427346 32 100.0 33 ................................ CAATAATTGTTTCCCTCCTTTTTAGGGGGGCTT 427281 32 100.0 34 ................................ TTAGATAGGTTAATTAAAGAGGTGGAGGGCAAAT 427215 32 100.0 36 ................................ CTCCCAATCATTTATAGTAAAATTAATCATTTTTTT 427147 32 100.0 37 ................................ TAGAGTCCCTTTTTTTATTAATTGTGCTTGTCTTAAC 427078 32 100.0 34 ................................ AATTCCCTCCTATACTTCGCTTATTAAAACTTCC 427012 32 100.0 35 ................................ TATTAGTATTAACTAACCTTATAAAATATTGCAAC 426945 32 100.0 34 ................................ AGAATAGAAGATATAGAAACTGAATTAGAATTGA 426879 32 100.0 35 ................................ TAAATAGATGGGGCGGAGAATTAGAAAGAGATAAC 426812 32 100.0 35 ................................ TATGATTGCGGTACTGAATGACGCATATGGCAATT 426745 32 100.0 34 ................................ ACATAATCCTATAGCGTTGTCTACCTCTAATCTT 426679 32 100.0 34 ................................ TTTTTTATACAATCCTTTGCATCCTCTCAGCTGC 426613 32 96.9 35 ...................T............ TCTGTCTACTTTTAACACAAAAAAAGTGTATGCTA 426546 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 38 32 99.8 34 GTCGCTCCCTATATGGGGGCGTGGATTGAAAT # Left flank : ATCTTGATGGATATCCAATTTTTATGTGGAAGTAGGTGGTATAATGTTAGTATTAATAACTTATGATGTAAATACACAAACACCACTTGGGAGGAAACGGTTACGACAAGTTGCAAAGCAATGTGTGAATTATGGTCAACGCGTCCAAAATTCAGTTTTTGAGTGTGTGTTGGATGTAGCTAAATGTCGTGAGGTTCAGCATAAGCTTGAGCAAATTATAGATAAAGATACAGATAGTTTAAGGTTTTATTATTTAGGAAATAATTATAAAAATAAGGTAGAACATATAGGTATAAAAGATTCTTTTAATGTTGAGGGAACACTTATAGTATAGTGCGAATATGTAGTGAACATAAAATTTCTATATCCTTCGCACCGCAAATATAATAATAATAGCAATAAAAAGTAAAACATATGACAGGAGTGATGTATATAAAAGATAAAACTTTCAAAATGATCATAAATCTAATGAATTTAAGAGATTTTTGAGCATTTTTGCT # Right flank : TATTAGTGATATATAAATGTATGTTTGAATTTATACATAGTGATTATTTAAGTGGTAAAAGCTTTGAATTGGCTCAGATTAAGAAGTTGTCTATTTGAGGTAAAGATATTGTTCATTCTACAGTTTCTAAACTAGAGGTTATTAATGCACAGTGTAGTGATAAAATATATAAATATTTAAAAGTAAGTATATTTTAAACTAGTGAGATATAAAGTGGTTAAAAGTAGTGTAGATAAGATATGATTACACTTTTTTATTTGAATAATAGATTACCCATTGACATTGCACGAAATTTATAATAAATTATAGAGGCATTTGTTTTATACGTTATTTTTATTTAATAAGAGGATTTTAATGCTTTAATTTATTATATTTTAAATGGTAGGATAACAATGTATATAACTTATGTAATTTACTAGTACATAGGGGGAAAAAATGAATAATGATAATAAGGTACAGATAGTTACAGCAGATCCATCTGCACTAGGTTTATTTGGTCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 93107-87545 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKWX010000006.1 Clostridium algidicarnis strain CM002 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 93106 29 100.0 37 ............................. TAAATTTAAATGTTTCACGTGAAACATTTTTCTAACC 93040 29 100.0 36 ............................. ATAGAACGTGGAATAGCTTTTACATCTTCCCACAAA 92975 29 100.0 36 ............................. TATGTCTGGAACAACTTATTCATACGTTTTAACTGT 92910 29 100.0 36 ............................. TCCATAAGCCGAAACACATTGATAAGCCAACAACTC 92845 29 100.0 36 ............................. TCTATTAAAGGGTCTAACAATGGGATTAATCTATCA 92780 29 100.0 37 ............................. CTCTAAAAACAAAAAAAAACTGGGGGTGTAACATGAA 92714 29 100.0 36 ............................. TACAAATAATGCATAACCTAGACCCTGACTTATTGC 92649 29 100.0 36 ............................. TATAGAAAAGAACATGGTTTATTAATCTTACTCTAA 92584 29 100.0 36 ............................. AAAAAGATGCTTTTTACAATAGAAATATGAATGGGG 92519 29 100.0 36 ............................. TTGTAATATTATTGAACTGTGCACTAATTCTTATTT 92454 29 100.0 36 ............................. AAAAAATGCGTGTCGTGTTTCTTTTACTGCTTGTTC 92389 29 100.0 37 ............................. ATTGTTTTTACAATACTTTCCATTGGAGCGACCTCGG 92323 29 96.6 36 ....................A........ TAAATGGAATATGGGTATATACTGGACTATATGGGC 92258 29 100.0 36 ............................. TTTTAAGTATTTCACTTTCCATTTTCTAGTCCTTTC 92193 29 100.0 37 ............................. CAGGTTAAAGAATCTAAGCAAATAAATAATAAAGATG 92127 29 100.0 36 ............................. AATTTTTTAAAGTTATTAACTAAATTAGATGCATAA 92062 29 100.0 35 ............................. CGATTAGTAAACCCTAACTCTTTAAAATTATTCAC 91998 29 100.0 35 ............................. TGAATTCAATCCCATTTATCATACAAGGCTCTTTG 91934 29 100.0 37 ............................. ATAGACACGCAAGAACCAACAACAAGGCTACTTGCTT 91868 29 100.0 37 ............................. GTAGCAGAAACCCGCCCGAGGATACCCCAGCCCGCAC 91802 29 100.0 37 ............................. ATAAAAGAGTTTATACTGCTTGTAAGAGCAGTTAATA 91736 29 100.0 36 ............................. TTGGCACTACTAGCTTTAAGCTACCCTCGTATAACA 91671 29 100.0 37 ............................. ATGGGTTTATTCATCGCATTTGCTATGCGCGTTGCCA 91605 29 100.0 35 ............................. TAATAATGGATATTGCATTTCCTTTTGATGTTCCC 91541 29 100.0 37 ............................. ATAGAATCAACATCACCTTGAACTTCTTGTTTAAAGG 91475 29 100.0 36 ............................. AATTCTTTAAAATTATTCACTAAATTAGATGCATAG 91410 29 100.0 37 ............................. CAAGTCCTTAGTTGTTTAAGGGGTAAGCCCCTCTTAG 91344 29 100.0 36 ............................. TTTGTTCGAACGCACAAAATACTATCATTGCAGGCG 91279 29 100.0 37 ............................. ATATTAGCGACTGTAGAAGGATTAAAAGATGTTGGAA 91213 29 100.0 35 ............................. CCGATTATTAATCTCAAACTGTTTAGGATAAAACC 91149 29 100.0 36 ............................. GAGATAAGGAAACCGTAATAGATGCACAATTCAAAG 91084 29 100.0 35 ............................. TAATATGATTGAGGGCGAGGATTATAGACGTATGG 91020 29 100.0 36 ............................. TCTACTGTTATAGATAGAGTTTTTGAGGACCTTAAA 90955 29 100.0 35 ............................. TTATTACTGATAATTGGTACTCTTGCGGGTTCGAT 90891 29 100.0 37 ............................. TTGCTTTTTTTCAGTTCCTCTAAACTTTTAGCTGAAC 90825 29 100.0 36 ............................. TGTTTCTAAACTACTATTTACATCTGTAGCATAATC 90760 29 100.0 36 ............................. TTATTTAAGTTATACAGGTTCTTTATATTTAAAAGA 90695 29 100.0 36 ............................. CTATATTGAATGCCTTTTGCTTTAAACTGGTCTATT 90630 29 100.0 37 ............................. TAAATAAACCTATATTTTCATAGTCGTTTTTGCCTTT 90564 29 100.0 35 ............................. CTGCATCAGATATGTGACTATATTGCGGTAGAAGG 90500 29 100.0 36 ............................. ATATGACAAACATAGTGCTAAGGGATATACGCACTC 90435 29 100.0 37 ............................. TAGTTAACGTTATTCTTATTACTTTTTAATCTTTTTA 90369 29 100.0 36 ............................. CTAAGTTAGCGTTAATAGAAGACATAAAGTGTGATG 90304 29 100.0 37 ............................. CAGATGGTAATATAGTTACTATAAACACTAGCTTAAA 90238 29 100.0 35 ............................. GTAGTAACAAACAAATGTCTTTGCGTTTGTATATC 90174 29 100.0 36 ............................. AGCAAAAACACTTGTGAGATAGCTAATACTCTTTTG 90109 29 100.0 36 ............................. AGAGTTTCCCCTAGGCTCTTAACTAATCCAATCTTA 90044 29 96.6 36 ....................T........ CCAGGTATCATTGCACAAGATATAAATAATAGATTC 89979 29 100.0 37 ............................. AATTTAAACGAAAGACTAAAAGCATTAGAAATGGCTA 89913 29 100.0 37 ............................. AGTAGTAAATAATAATCTTTCTGGCTTTGACAGAAGA 89847 29 100.0 37 ............................. ACCGTATATTTGCCCTCTTTGAGGCAATGAGGCACAT 89781 29 100.0 37 ............................. GATATTGGGGCTAGTGGATATAGGAAAGAAGATGATC 89715 29 100.0 37 ............................. CCATTATTGCCATAATAGATACTATACCAATCTCCTT 89649 29 100.0 36 ............................. CGTTCTATACTAGCTACCTGGCTACGGGAAATTCCT 89584 29 100.0 35 ............................. GTTTTATGCACTTTTACTTGCGCTAATGATAATTC 89520 29 100.0 37 ............................. ACCATTTTTACATCTCCTCTGGAAAAAATACTTCTGA 89454 29 100.0 36 ............................. AGAAAAAATATTCTATAAGGATTGCCGGTGCATTAG 89389 29 100.0 35 ............................. ATCAATTGTGATAAATCGTTTGGTAAAGTTTTAAT 89325 29 100.0 36 ............................. GTGCCTACCCTTAAGACAAGACTCACCCTTAAAAGT 89260 29 100.0 36 ............................. CCACCAATGGAGCAACTTCTACAGTAGGTTCATCCC 89195 29 100.0 35 ............................. AGTCCTCTAAAACCTGTGCTAGAACTTAAAACCTT 89131 29 100.0 35 ............................. TCTTTTAATTGTACTAACATGTCTTTTAATTTATC 89067 29 100.0 37 ............................. GTATGCTTTACAACCATTCCATCTGCATCTGTAATTG 89001 29 100.0 36 ............................. GAACAGTGACCTGGACACTAGCGTAGAGACAACAAC 88936 29 100.0 36 ............................. GGTACATTTATTGTTTTGGTTAGGATTCGATTTAGA 88871 29 100.0 35 ............................. CACATAGCGTGTAACAGTTGCAAGGGATAACCGCA 88807 29 100.0 37 ............................. AAAAAAGAGTTCGACTATGTCTTCGACACTTCTTTCG 88741 29 100.0 35 ............................. ATAAATAATTTAGAATTTAATACAAAATTTGATAG 88677 29 100.0 37 ............................. GGAAGCATTACATCACTATAGCTAATGCCCCAAGTAT 88611 29 100.0 36 ............................. GTTACCAAACCCGATACATCTTTTAAAGACGAGTTA 88546 29 100.0 35 ............................. ATCTTTTTAAGTTGGATAATGCTTTCTAATTGTCG 88482 29 100.0 36 ............................. ATTAAAAGAGTTTATACTGCTTGTAAGAGCAGTTAA 88417 29 100.0 36 ............................. TCTTTCTTATATTCTTCTATACAATCTACGCATAGT 88352 29 100.0 35 ............................. TTTCTAATACCTTGCTTTTGGTGCAACGCTTGTGC 88288 29 100.0 35 ............................. TGAAGAAAATGAAAAGAAACTAAAGAACCATTTTT 88224 29 100.0 36 ............................. TACTTGAACGATAGCGGTAATATAGCTAAAGCTAAT 88159 29 100.0 36 ............................. TTTCTTACAACTGCTTTTTGGCTTGCATACTTAACA 88094 29 100.0 35 ............................. ACGGCTCAAATTATGATACACAATGCAAGTTGTGG 88030 29 100.0 37 ............................. TTCACCAGGATTGTCGCCTAGTTCCCTACAAAATATA 87964 29 100.0 35 ............................. GATAATATCGCAAAAATGATAGCTAAGGCAATTAC 87900 29 100.0 37 ............................. TTGGGAAAAGTAGGCAAAGAAATAATAAAAGAGATTG 87834 29 100.0 36 ............................. AGGATTAAGGAAATACAAAATAAAATCATAAACTGA 87769 29 100.0 36 ............................. TATAAAATAGGGTATGCTTTGGGCTTTGCGCTAGGG 87704 29 100.0 37 ............................. ATCTTAGTAGTATTAAGTAGTCTCTCTTGCTGGCAAG 87638 29 100.0 35 ............................. ACAACTATGGTTATATTAGGTAATGGAAATGATAC 87574 28 79.3 0 ............G...-......T.T.GT | A,C [87552,87564] ========== ====== ====== ====== ============================= ===================================== ================== 86 29 99.7 36 GTTTTATATTAACTATGTGAGATGTAAAG # Left flank : AAGTGTTTTAAATGATTAAAATTAATGATATAATGGTGGTGATATTTTGTTTGTGATTTTAACTTATGATATTGAGGAAAAGAGGATAAATAGAGTTAGAAAAACACTTAAGAAATATTTAACATGGACACAAAATTCAGTGTTTGAAGGTGAGATAACAGAGGGAAAGCTCCACAAATGTTTATCAGAGATTAATAAACTTATAGATAAAAAAGCAGACTCTATATATGTATACAGGGTAAAAATATCTAAAAATATTAGAAAAGATGTTATTGGAATAGAAAAAAGTTTTGATGAACTTTTTTTATGACTAAAACTGCATCGATGCAAACAAAGGTTCTAGGTGCGACAACACGTTGACTTTACTGTGTTAGAATAGAAGTTTCTATAAAATAACAAAACATTATTCTAGGTTCACTGCAAAATTGTCTATTTAAGCACTATCAATGGTAGCGCCTAGGCCAGTAATACCAGTATGTTAATTAATTGTGATCTTTGGG # Right flank : ACATTAATCTATGAAGAGACCTTTGGTAAAAGCTATAAAGAACTTAAAGCTGATTGAATTAAATACCTTAAAGATAATATTAAATATATAGAATTGATACTCTGATACAAAACATTATTATGAAGAACTATAATTTGTTTTTTTATTGCTCCCTTTTTTTATGATCTGAACATTCCCTCCATCTTTTAAGAGGTGGGGATTATTTTTTATAAGAAAGTTTACTATTATTAATAGATATTCTAACCTTATTAAGGTAAGATGAAACCCAAAATATTATTATTATGATATAGTTAATTAAGAACACTACATAAAGAAAAGAGGAAAAATCATGTCAGAATGTATATTTTGTAATTACAATAAATCAGAGATAATAGCAGAAAACAAATACACCTTTGCTATCTTAGATCACTTCCCAGTAAATGAAGGTCATTGTTTAATCATACCTAAGAGACATTTTATGAACTTTTTTGAGGCAAGTGAAGAAGAGGTTAAAGCCATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGAGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //