Array 1 68110-67820 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIU01000003.1 Clostridium sp. AM34-9AC AM34-9AC.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 68109 25 100.0 40 ......................... CAGACCTGGATAAGTGGGAGCAGTACTGGAATCTACACTT 68044 25 100.0 38 ......................... TCGTTACAAGCCGTCATGCTATGTGGATATCTACACTA 67981 25 100.0 38 ......................... CGGTTTTTTACAGCCAGTTTAAGTTTTCATCTACACTA 67918 25 100.0 48 ......................... CTCTTATTTTGTGGTATTGCACAATTTGGGGCTTAATATGCTTATGTT 67845 25 80.0 0 T...C.C......G.........C. | T [67842] ========== ====== ====== ====== ========================= ================================================ ================== 5 25 96.0 41 GTAGAAATTTTTTCTTATTATTTAA # Left flank : GCCATTCGTAAAATTTGCTCTCAATGGCAGCCTTGGAGTTTTTCAACTGCTCCGCCTTCTCCGTGGCATACAACAGCTGGCTCCTGCCATCCGCCGGGTTGGGCTTCCGGTAAAGGTATCCCTTGCTCTCCAGACTCGCCGCACGCCTTGCGGCAGCTCCCTTGTCGATCTTCAGCTGTTCCCGCACCGCCGCCTGGGTAATGCCCGGATTGTGCCGTACCAGATGGATAAAATCAAATTCCGCAGTTCCAATCCCATCTTCCTTCATGGTCTGCACCGTGAATTTGCTCACTTCTCTTGCTATTTTCGTCATTTTTCGTTCTGTTGCATCCATGGTTCTACCTCTCTGTGTTGTATTCAGATAACAGAAAAAGATGTACCTGCATCCAAAATGGATGATAGTACATCTTTTTTGCGCTGTCAATGATTTATTTGACGAGTTAATGTTGTGTTTCTGGTTATTTTAATCTATATATGTTAAAAAAACCGATCTACATTTA # Right flank : CTAATTTTTTTTACAATAAACCTATCTACAGATATTTGAAGCTAGGTTTGTATTTTCTGTAATTATATTATCCTTTATTCGATCACTATTGTCAATTTCAAACACAGAATATTGTATCCTATGTCCGAATCACTTTATGGGCATTTGTTCCGTTCATCTGCGCTTCGGTCTGATAGGTCAGGTTGTCCTGACCTCCATATAATTTATGAAAATATGTGGAGGCCGGGCAAAAAAACTTCCATCTACAAATACCTTTTTTTCTGCATAAAATCAAACCATGTTTTATTATCCTGCACAAGTTTGTTCCTTGGGAACTGTTCGTTTTCCTTCCAGTTTTCTTTAATCTGCTTTACTTCATAAAGACCTTTCAGAGCAATACAATATGCACCATTTGCATCTGCATCCTGAGGCAAAGTTTTGTCTGCTGTTGCGGTATCAAAGAACTCGCCTTTATCATTTAATACTGGAGAAATCAACCTGTCATATTCTCTGTCTTCCGA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATTTTTTCTTATTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:88.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 15147-12333 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIU01000017.1 Clostridium sp. AM34-9AC AM34-9AC.Scaf17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 15146 32 100.0 33 ................................ CTGCTGGACAGATGCATTACTAAGCAGAACATC 15081 32 100.0 36 ................................ GTCCGGTGTTGTTGCAATCGTAAAAGGTGCAGGATA 15013 32 100.0 34 ................................ ATAGTTGGATGACAGGTTTTCGGTGACTTTTTAA 14947 32 100.0 34 ................................ CAGTGACATATTGGTCAGCTTGTAACTACACCGG 14881 32 100.0 35 ................................ ACATTTTGGCGTTGAGCAAGTAGCAACCACATTAC 14814 32 100.0 33 ................................ CAAGAATCACGGTAACCTTGTTACAACAGGAAC 14749 32 100.0 33 ................................ GTGCTCGTAGACACCCATAAAATAATCTTTACC 14684 32 100.0 34 ................................ TATGAAATCTGCACTGGGCGGCATAATATGCACC 14618 32 100.0 35 ................................ TATAAGATTGTCTGTCTCGTATTCGATCGGTTTGT 14551 32 100.0 33 ................................ TGAGACGGCTGCAGGTGGTGGCACCGGTAATAT 14486 32 100.0 33 ................................ TGAGCAGAGGCACTATTAAGCAAAACATCAATA 14421 32 100.0 34 ................................ GGGATCCGGAGTGTCCGCTTACATTTAACACGGT 14355 32 100.0 33 ................................ AACAGAATGCGACATCAAACTACCTCACTTTCT 14290 32 100.0 35 ................................ AGTTATATGTGGAACGGAATGTTCCAGGGAAAGTC 14223 32 100.0 35 ................................ CTTTTTCAGCATCTTTGAGCAGAAATGAAAATACT 14156 32 100.0 33 ................................ ATCCAGCACAAAAGCCTGTAGCAGTCCTTAAAA 14091 32 100.0 34 ................................ AGAACGGTGAATTACTCTACATGGCTACACATCC 14025 32 100.0 35 ................................ ATCCATCTCTCCCTGGCAATGATCAAAGCAGTTTG 13958 32 100.0 34 ................................ TTCTGAAGCTCCTCCGATAATATCTTTTCCTCCA 13892 32 100.0 36 ................................ ATGCAGTGTATTCCCGGAATGGGAGTACTGACAGGG 13824 32 100.0 33 ................................ ATTTACCTGATAGATGTTGATTCGGTCTTCGGA 13759 32 100.0 37 ................................ CTACCATGGCTTACACTACTGCTCTACGCGTGCGATC 13690 32 100.0 35 ................................ AAAAAGAGCAGGCAGAATGTTTATCTGCACAGGAA 13623 32 100.0 34 ................................ ACAAAATCGTTAATATCGATTGCGTACTTGTCTG 13557 32 100.0 35 ................................ TAGATGTTGCTACGGGTAACAGCAAGACAGCAGAA 13490 32 100.0 33 ................................ TACGGTACTCAGAAGTTGCAGAAGCATATTACC 13425 32 96.9 33 A............................... ACACAATACTGTGGATAATCGTCCGGTACTGCG 13360 32 100.0 35 ................................ CTGCGCAATGAATAAAATATTTTGCCCCGTTGTAC 13293 32 100.0 34 ................................ TACCGGGGTAGCGTAAATGGCGTGCAAGCCAATT 13227 32 100.0 34 ................................ ATGTCAATACAGCGTGTGCTGCGAAGAGCTTTCC 13161 32 100.0 34 ................................ CGGTTTCCGGCTGTACCTTAGTTGCAGCATCGGC 13095 32 100.0 34 ................................ GATGCTATCACCGAAGAGGTTTCCGGAGCCGGTG 13029 32 100.0 34 ................................ ATGTATGAGCCGGTATTTATCAAGACACAGGCAA 12963 32 100.0 33 ................................ CCTGGAGTTAAAGAGCAGCTGTGCCTCATCTAT 12898 32 100.0 34 ................................ AAAGTAAGCCTTGACTGGTTAGTAACTGGAAAAG 12832 32 100.0 35 ................................ TCCGGAAAATAAAGGTAAATCGTCCGGGTCAGGAC 12765 32 100.0 34 ................................ ATCAAATTCACATCAACGCATCTGTCCAACTGCG 12699 32 100.0 35 ................................ CGCGGGGTTCCAATAGAGGTCTAACTTGCTTACGC 12632 32 100.0 34 ................................ GCTTCCAAGATCTAAGTACTGTATGGATGAGGCT 12566 32 100.0 35 ................................ ATCTGATGTTAGACTGCGGACTCCGGCGTCAGGAA 12499 32 100.0 35 ................................ ATTTCTGTCTTCATCCGGACTGCCTCCAATCTGTT 12432 32 93.8 36 .............C.......C.......... GCACGGACGATGGGGATAATCTGTTTTTTCAACATG 12364 32 84.4 0 ...........T.C.......ACC........ | ========== ====== ====== ====== ================================ ===================================== ================== 43 32 99.4 34 GTCGCTCCCCTCGTGGGAGCGTGGATTGAAAT # Left flank : GGTTATCCTGCATTCCTGTGGAAGTGAGGTGCGATATGTTAGTATTGATCACATACGATGTCAACACAGAAAATGCGACCGGAAAAGCGAGATTACGCAAAGTGGCAAAACAATGCGTTAATTATGGCAGAAGAGTTCAGAATTCTGTGTTTGAATGTATTTTGGATAATGCTCAGAGCATTGCATTGAAGGCAACACTTGAGGATATTATTGATACAGAAAAGGACAGTCTTCGATTCTACTATCTGGGTAATAAATATCAGACCAAGATTGAACATATCGGGGTAGACAGAGGAATCGCCCCGGATCAGACACTGATTTTGTAACTGATGCGAAAGCCAAGCATACATAAAATGCCTGGGGGATTCGCACCTTATAAATTATGCGATTTATTGAAATAACATACAAAGATATTTTTAATTAAAATAATTTGTTGTTAAGATTAAATATTTTAGACAATTTTTGCTGAGAGAAAAGAGAACTTTTTGGCGAAAATTGCT # Right flank : AGAAAAGACAATCGTATATCATGTACTATGTGATTACATAGAAGGAGGATATCTAATTGAGTAAGACGGTTAGGCAAAGTGATTGGGCAACGGAAACGCATATGGAAGCCCTATTTTGGAGAAACGGAATGACACCGGAAGAATACGAGATGGAAAACAGATATTTGAGTAAAAATTTTTATAAGCAAAAAGATGGAAACTATATGCCACTTTGGATGCAAGAAGAGAACATGAAAGCATAATTAGTTCTTTGGATTTTTTTATTTACAGACAAGAAATACTTTATATTGAAATCAAAACAGATTGTAATAATTTCTTATACTATTCTATTTTATGTCTGATATTGTACAACATGTTGATAATTACAATATCTTTTAAAGTCAGTTTTAAGAAAATCTATTTATATTTCCTACGTAACAATTTGAATTTTTAATGTTATGTCGCATGGCTTTGTGTAAATTTGTGTATTTCGCTATTGATTTTGTGTAAGATTGTGTATA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.90,-5.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //