Array 1 54630-55018 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBT01000012.1 Pseudomonas aeruginosa strain Pa1175 K11_S94_R1__paired__contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 54630 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 54690 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 54750 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 54810 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 54870 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 54930 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 54990 28 96.4 0 ........................C... | T [55016] ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : TCAGAAGATAATCGACAACGCCAGCGCATATGTTAACTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 48-375 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBT01000080.1 Pseudomonas aeruginosa strain Pa1175 K11_S94_R1__paired__contig_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 108 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 168 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 228 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 288 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 348 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TAGGCAGCTAAGAAATGGCGCCGCCCGATTTCACGTAGCTGCTCGATG # Right flank : AGTGTCGCCCAGCACCGTTCAGCGCTACTTCATGTTCACTGCCGTATAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCAGCTAAGAAAAGCAATGGAAAGCAGCGATGTGACCCGACCCGGTTCACTGCCGTATAGGCAGCTAAGAAATGCAGGTCATAGGCGTATTCGAAGGACAGGCTGTTCACTGCCGTATAGGCAGCTAAAAAATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACATAGGTCGTCAAGAAACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 453-780 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBT01000087.1 Pseudomonas aeruginosa strain Pa1175 K11_S94_R1__paired__contig_87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 453 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 513 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 573 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 633 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 693 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 753 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ATTATTGAAATCCTCAGCGGCCTGCACTTGCTCGTTCACTGCCGTGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTCGTTCACTGCCGTGTAGGCAGCTAAGAAATGCGTAGATGCCGCGATCATAGCGCGCCCTACGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGGTACTTCTGAACCATACGTCGCCGCATAGTTCACTGCCGTGTAGGCAGCTAAGAAAAGTCATCGATGAACGACGAGCCGGTCAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1352-1800 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBT01000087.1 Pseudomonas aeruginosa strain Pa1175 K11_S94_R1__paired__contig_87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1352 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 1412 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 1472 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 1532 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 1593 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 1653 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 1713 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 1773 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTCGTTCACTGCCGTGTAGGCAGCTAAGAAATGCGTAGATGCCGCGATCATAGCGCGCCCTACGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGGTACTTCTGAACCATACGTCGCCGCATAGTTCACTGCCGTGTAGGCAGCTAAGAAAAGTCATCGATGAACGACGAGCCGGTCAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGTAGGCAGCTAAGAAACCGGACGTTCACGCTGGTGGTGAGACCATCCG # Right flank : TGATGCCGGACATGGGACGTTTCGCGGGAACCGTTCACTGCCGTGTAGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //