Array 1 18195-21083 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOIX010000006.1 Phocaeicola vulgatus strain MSK.17.5 NODE_6_length_138861_cov_204.598, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 18195 47 97.9 30 ...A........................................... ACTTGCATTCTTGGCTATTATCAGGCTGGT 18272 47 100.0 30 ............................................... CCTCGGGTGTACGCTTAGCACTCGTTACTG 18349 47 100.0 30 ............................................... CGTTGAGGTTCCCGTACCTTCCAAGATTAT 18426 47 100.0 30 ............................................... TTGTTTATCTATCACCTAAACAGCTTGTTC 18503 47 100.0 30 ............................................... TGTCAGCCGGATATATCAAAGGACTTGTGC 18580 47 100.0 29 ............................................... TACAATGAGGATGATGTTTGCCAATGCTG 18656 47 100.0 30 ............................................... GTTTTTCAGGTAAGAGCATATCCCGTGATA 18733 47 100.0 30 ............................................... ACGATAACAAGTGCCAAGCGCTCTATTTCT 18810 47 100.0 30 ............................................... CCTTCAAACTCAAGGCGCTTTGACAGAGAA 18887 47 100.0 30 ............................................... ATTAACGATTTAAAATTATTATGATTATGC 18964 47 100.0 30 ............................................... AGCAGCAGATAAGGCGCCAATTACAAGTTT 19041 47 100.0 30 ............................................... GAGAAGCCTTGTACAACTTAACTTTCTCTT 19118 47 100.0 30 ............................................... AGTTTGCACCAACCCAACCATTTGCAGTAT 19195 47 100.0 30 ............................................... TATAGTTTAAAACGTCCTCTTTAATTGCTT 19272 47 100.0 29 ............................................... CCGTAAAAATAACTAAACTCGAGTATGGG 19348 47 100.0 30 ............................................... GTTTCATTATTTTTCATAAGTCTAAATTTT 19425 47 100.0 30 ............................................... CCGGCGAGAATATATTACACCAAAGTTTTC 19502 47 100.0 30 ............................................... TTATAACGGCACCAGGACGCAAAACATAAT 19579 47 100.0 30 ............................................... GTGACAATGATTATAGAGTTTGGAGAAATC 19656 47 100.0 30 ............................................... GCAATGCGTGTACCTGTATACTTATTCGTA 19733 47 100.0 30 ............................................... TACTAAATTGAACTACTTCTTTCCAACGCT 19810 47 100.0 29 ............................................... AATATGTTCATTATCATAAGTAAGTGTAA 19886 47 100.0 29 ............................................... TGAATTTGTTGGTAATCTTGGTTTAAGTA 19962 47 100.0 30 ............................................... GTAAGGTTTGCAGCTGAAGAAGCTATAGCA 20039 47 100.0 30 ............................................... GCAGGAGCCGTTGCCTTGCGCGCGGGGCGC 20116 47 100.0 30 ............................................... TAAGGCTAATCCTATTCTTACTGATGATGA 20193 47 100.0 30 ............................................... AATTAAGCGAAGCCCCTAGTTGTGTGCGAA 20270 47 100.0 29 ............................................... AGAAAAATCAATTTTGAATGAAAGATTAG 20346 47 100.0 29 ............................................... TGATATTAATTACGGATATGTAGAAGCCT 20422 47 100.0 30 ............................................... AATTTTCACGTATGGCTTCTTTTTCCGCAT 20499 47 100.0 30 ............................................... TCAAATTAAATCAACAATGTCAAACAAATT 20576 47 100.0 30 ............................................... ATCACGAATTTCTCAGCCTGTTTTGAATTA 20653 47 100.0 30 ............................................... AACTTGTCGTAATCCGTTGTCTTCGGGTCA 20730 47 100.0 30 ............................................... TAACTTTCTAAAATGATTTGTAACTTTGTC 20807 47 100.0 30 ............................................... TGTCTTGCTTGTTTTCAATATCATGCTCGA 20884 47 100.0 29 ............................................... TCTCTAAATGTCTTGCGAAGTTCCTGTTA 20960 47 100.0 30 ............................................... AGGATTGACGATGATAACCATAGGCGGTAA 21037 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 38 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGGTTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CGGAATATATGTTACAAACTAATTACCAATTAGTTACACATATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTCTGAAACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //