Array 1 1727998-1727663 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028843.1 Methylobacterium currus strain PR1016A chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1727997 29 100.0 32 ............................. CACGTTCCGGCTGTCGACCCATGCGAAGTTCA 1727936 29 100.0 32 ............................. CTGCCGCTCGGCATGGGCGGCAAGCTGAGCGC 1727875 29 100.0 32 ............................. GCGCCGTGCGCTACGGCGATCTTCGACCCGTT 1727814 29 100.0 32 ............................. CAAGGCTTGCGGGGGCCAGCCGCCTTACTTTG 1727753 29 96.6 32 ............................T TTGACGTCATCCGGGACGAAGTCGAGGTAGTT 1727692 29 89.7 0 ..............A.....TT....... | G [1727665] ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GGCTCCCCCGCCCACGCGGGGATCGACCC # Left flank : CCCCACCGACCCGATCGAGCGCCTGGCGCGCCGGACCGTCGCCGAGCGGCTGCGGCGCGACGGCGTCATCCCGGCGATGATCGACCGCATCAAGACCCTGTTCGAGGAGGAGACCACGTGACGGGCCGGTCCGCCTCATGCCTCCCGAGGGTCTTCGTGCCATGCCGATGACCGTGGTGGTGACCCGGGACGTCGCCGACCGCTTCCGCGGCTTCCTGTCCTCGGTGATGCCGGAGGCCGCCCCCGGCGTCTTCGTCGGCGCCGAGCTGTCCCGGGGCGTGCGCGAGCGGGTCTGGACCGTGCTGTCGGAGTGGTGGACCGAGATGCCCGGCGGCTCGATCGTTCTCCTGTGGAAGGACGACGCCGCGCCGGGCCGCCTCGGCCTGCGCACCCTCGGTCTCCCGCCCCGCACCCTCGCGGACCTCGACGGCGCCTTGCTCGTCCGCCGGTGAGGGGCGTTCTTCGACATCGTGAATGATACCAGCGACTTGAGCGGCAGG # Right flank : GATGCGCTGGACCTGGCCGAGAGCGATACCGAACCGAACAGCGCTGTCGCATCGTCAGCGGCACGACCACACCCGGCCTTCGCAGGCAGGCCGTCCGCCGATGTTTCGCCTCGGGGCGATCACCACCCGATCATCGCGCGGGGATCGCGCATGCGCGCATCGCCCGAGGCGGCGACGGCCTGCGAGGAGCCATCGACCGTCGGCGGCCGCTCCACGGGCGAATGGCGGGCTCGTCGGCTCTGCGAGGTGTTGGGACGACGGCAGGCGGCCGAGCGAGCAGGCGAGAACCGGGATAACCTGACGCGTGCCCAGCACACCCTCGCCGATCCGCCGGGCTTGTCACACGCACATATCGACCGAACATTCCAAGCTCTGCGGCATCAGAGACTCATTGAATTGCGACACGGGCACATGACAATCATTGGTTTTACGATCTTTGAAAAGATAGCAAAATTTCGATCAAAATATCATAATTCTTATTTCTAGCTGCGGGAAAAATA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCCCACGCGGGGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 4240914-4238750 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028843.1 Methylobacterium currus strain PR1016A chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4240913 29 100.0 32 ............................. CCCACCGCAGGGGAAATCCGTGTCGGCCCCTC 4240852 29 100.0 32 ............................. CTGAAGCTCACCGCTGACCTCAACACGGCGCG 4240791 29 100.0 32 ............................. GTGATTGGCGGAGATCCCGCGCATCACGCCAT 4240730 29 96.6 32 ............................G CAGCCGTTGCCAAAAACAACGACCAGAGGAGC 4240669 29 100.0 32 ............................. GCGGCCAGCCTGATCTATTCGTGTGCTCCGCC 4240608 29 100.0 32 ............................. CTTGAGGAAGCGGACCGCATCATGCAGATGCC 4240547 29 100.0 32 ............................. GAGGTTGAGCATCGGCGCCGGCCCGGTGAGAA 4240486 29 100.0 32 ............................. CCGAGCGTGCTGACGCCGCCGGACACGTGCTG 4240425 29 100.0 32 ............................. CGCACGAACGGCGCCAGGATGAACCCGAAGGT 4240364 29 100.0 32 ............................. CAGTCATCAAGCACGCCAAGAAGCTCGGCTTT 4240303 29 100.0 32 ............................. AAAGCGTTAGAGCTTGCGTTAGATGCCCGAGC 4240242 29 100.0 32 ............................. GGTACCCGTTCACCAGCTCCGCAGGCAGGCTT 4240181 29 100.0 32 ............................. CGCTTGATGCCGCGGTAGCCGATCTCCTTCTG 4240120 29 96.6 32 ............................G TTTATGGAGTGACCATTGACCGTGTATTGGGG 4240059 29 100.0 32 ............................. TCATACACTGCTATACAATCCTGCCGACATGA 4239998 29 100.0 32 ............................. CTCCTCGCGACGCAGCTCGCGGACCTGGTGGA 4239937 29 100.0 32 ............................. CGCCGATGTCGATCGTCATCTTGAGGATGGCG 4239876 29 100.0 32 ............................. CGGGTCTATGTGACCTGCATCTACGAGACGCC 4239815 29 100.0 32 ............................. GCAAGATGACGCCTGAGGAGCGCCGACAAGCT 4239754 29 96.6 32 ............................G CTGGCCGGGCCGAAGGTAGCCTACGGGGTGAT 4239693 29 100.0 32 ............................. CTCGGTTTCGCTCTCGGCCAACACCTCGACGC 4239632 29 100.0 32 ............................. TGAACGACGCGCGGCTGTCCGCCGATCCGGCC 4239571 29 96.6 32 ..........................G.. GCCGAGACGAGGCCTGACCCGATCCAGCCGAA 4239510 29 96.6 32 ............................G ACGCCTATTGCGGTGACCTTCGTAAGCATCCC 4239449 29 100.0 32 ............................. CCGTGAAAGGGCGCCGGCTGTCTGATTAGCCG 4239388 29 100.0 32 ............................. CGCTCGGTTTTCGTCCTGGCGCGCACACGATC 4239327 29 100.0 32 ............................. TACGCCGCATATCGGGCCAAGTGGGATGCTGA 4239266 29 100.0 32 ............................. ATCACGCCGCAGAACGGGCGCCCGGCCGGCGT 4239205 29 100.0 32 ............................. CGGGGAGGGTTATCCCTTCCTCCCCCTCCACC 4239144 29 100.0 32 ............................. GCCGACCTGTCCAGCCTGGGGGAGGCCTTGTG 4239083 29 100.0 32 ............................. CGCATCTCGCCGGTCCAGACCGGGCCGGCCTT 4239022 29 100.0 32 ............................. CCGTCGGGGGCTTCTGCCCTCTACGGCGAGCG 4238961 29 100.0 32 ............................. GCCACCGGCTACAAGGACCAGGCCATCACGAT 4238900 29 96.6 32 ...........................T. GGATGGGCGCCTCCCTGGCGGGACCGGGCTTT 4238839 28 89.7 33 ..........T...T..........-... GGTGCTCGACGGGATAGGCCGAGGCGAGAACTC 4238778 28 79.3 0 C...T.......CG..........T-... | T [4238752] ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.6 32 GGCTCCCCCGCCTACGCGGGGATCGACCC # Left flank : GGCGGCGGGGAAAACCGCGCACGTCCTCGCGCCGCAGGGGCGGCAGGTGCTCGCCGAAGCGCGCGCGATAGGCCGCATAGAGGTCGTCGCGGTGGCCCCGCTCCTCGTCGGCCATCGCCTCGAACAGGCCGGCGGAGCCCGGCAGGTCGGCCCGCAGGCTCTCGGCGAAGCTGCGATAGATGCGGGAATCCTCCTCCTCGCTGGCGATGGCGAGGGCCAGCACCTCGCGCTCGGTGAGATCGGTCAGGGCCTTCATGCGAACGTTCCTGTTTGGAATGGCTCCAATCTATAGATTGGAGCCATTCCAAACAAGTCGCGATCGGGCATCGGGATCTGTCAGCGCCTGCTGCCGGATCAAAGCGGATGCCGCCGAGCCCTCCCCGCCCCTGGACGACCTAGTCCGCACCCGGCATTCTCGGGGACTGCGACGGGCCCGCTTCGCACCTGCGAAAGGTGGCGTTCTTTGACATTGTGAATGGCACCAGCTACTTAACTGGAAG # Right flank : ACAAGCACCCCGCGGGTGCGGTGCCGCACGCAACGGCACGGGCGTGCAACGTGGCGGCGGTTGCCTCGCGGGCCCGAACGGAGCATGACGGCGCCCGGATTCGCGGAGCCGGGCCGGGCCGGATTCACCGCGTCCCTCACGCAAGCGTTTCTCCTCCACGAAGTGGCCGAATGAGCGTCGTCACCCGCATCGCCCGCAGCCGGGCGGCCCAGGAGAGCCTCGGCTTCCTCGGCGCGAGCTACCTGAAGCTGGTGCGCGGCACGAACCGCTTCACCCTCGATCCGCCCGGCGCCTATGACTGGCTGTCGCCCCTGCGGCCGTTCATCATCGCGATGTGGCACGGGCAGCACCTGCTGGTGCCCTTCATGCGCCGGCCCGAGGACCGGGCCGCCACCATGGTGTCGCGCTCGTTCGACGGCGGGGTGAACACCGCCGTGCTGGAGCGGATGGGCGTGCGGGTCATCCGCGGCTCCGGCGCCCGGAGGGCGAGCGACATCTGG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCCTACGCGGGGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //