Array 1 2092-1596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHVB010000059.1 Ruficoccus amylovorans strain JCM31066 Gn_406_8893_948733, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2091 36 100.0 30 .................................... GAGGTCAAGCGCATGTACTCGGAAGATATG 2025 36 100.0 30 .................................... GTAAAAGGCGACGACGTCCTCCCAGTCGCG 1959 36 100.0 29 .................................... TCTCTTGAGAGCGACGGGCATGGCGGGTC 1894 36 100.0 30 .................................... CTCGACCGCTCCCTCGCTCACGGCCCACAG 1828 36 100.0 30 .................................... TCTGCCTGCGCGATGGTAAGGCCTACGAGG 1762 36 100.0 29 .................................... AAAGAAATGGCGGAAGTCGTGATGCGTGA 1697 36 100.0 30 .................................... TGTTCGCGGATGAAGTCCGGGTAATGAGGA 1631 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 AGTCTGCTGACTTAGGATTTGGATTCAAGGCAAAGC # Left flank : ACTACATCACGGAGTTTATATTGGAACGTGTGGGCTACCTCGGACTGGAGATGGATCTCAAAAACTGTCTGGAATCAGTGGTGCGGAGTTTTCGCAGCGCCGTTTTAACTGGACAAACACGTAGCTATAAACCATGGACCCCCTCAAATTCAAAATGGGCTGGCTGATTGTGGCCTTCGACCTGCCGGTCACAGAAAAGGAAGCCCGTAAGGCATATGCGGACTTTCGTAAATTTCTGTTGAACGATGGTTTTCAGATGATACAATTCTCAGTATATGCCCGCCCAATGGTTACATACTCGCGCATGCAGACTCATCTGCGTCGGGTTGAACAGGAAATTCCTCCTGAAGGAAAAGTTCGGGCCTGGTACGTTACCCAATCCCAATGGCAGCGAAGCCTGGTTATCCATGGCAAACCAGCCGAAAGAATGCCCCCCGAGGGACTCCCGGAACAGATACAACTTTGGTAAGGCCCTAATTGTCAGCAGACTCGGGAATGCA # Right flank : CGTATCTTGAACCTCCCAGCTAAAGAAAAGCCCCCCTGGGTCCCTGCCGAATCGTGGTAGGGCCGATGGTGGGGCTTCTCCGGTGTAAACCATGGTTTACACCAAGGGCTTGTGAGGCCTAGTTGAGTCCGGCCTCATGGTCGAGGAGTCGGTGCAGGCGTCAGGTTCTGTCCGGGAGTAGGTCCACGCGGCCCTTGAAGACTTCCGTAAAGGTGTTCTGGAGGCTCCAGAGGGTGCGGGGTATGAACGCTTCATGACGGGGCTTTCTCCACAGAGAGAGGACCTTGGGGATGTATCCGTTGGCCATGACACCGGTATCGACAGCGCGGATAACCAGATCATGGGCACGCCGGTCATTGATGCGGGCCTCGCGGTAACGGATGACCCGGTAATCGTGCTGGTCCCAGTAGCGCCTGAGCTTGCCCACAGCGGCATCAACCAGCCGGGGCAGGTCGTCGAGGATACGCGGGGTGTGCTTGCGGGCCAACTGGATCTCGCCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTGCTGACTTAGGATTTGGATTCAAGGCAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 296652-298157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHVB010000035.1 Ruficoccus amylovorans strain JCM31066 Gn_380_632822_70757067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 296652 33 100.0 35 ................................. CGTGCGCTTTGTCTGATGGTGTATGGGCTGCATAC 296720 33 100.0 33 ................................. CAGCACCTCCGAGTTACACTTGCGCGTCGCCAA 296786 33 100.0 34 ................................. AGCCGGCTCCAGCGCTGGTTACTCGGGGCGATGC 296853 33 100.0 35 ................................. GATCACCATCGTCATGCCCTCCTCAGTTCAGCCGA 296921 33 100.0 33 ................................. CACACGCACGGCTCGCAAGCTCAGGGCCGCCGT 296987 33 100.0 35 ................................. TCGCTGATCGTGAGCTTCATGCTGTGATCGTTGGC 297055 33 100.0 34 ................................. TCGCGCTGGGGGCCTCGGCTGAACTCACCGAGGG 297122 33 100.0 33 ................................. TCGTCCCTGGGCACGTGCCGCGGCTGCCGCCCG 297188 33 100.0 33 ................................. GACAGGGTGTGTGTACGATTTGCCGCATAAAAT 297254 33 100.0 33 ................................. TGCTTGACGAAAAGCCGACCGACCTGACCCCCT 297320 33 100.0 34 ................................. GCACCAGCAACAAGCAGCACGACGAGATCACCGA 297387 33 100.0 34 ................................. CGGCGGCGCTGGAAGCGATCGAGGAGGCGAGGGC 297454 33 100.0 35 ................................. AAACGAGCGCGTCACCGAGCGCCCGTCATCCAGCA 297522 33 100.0 34 ................................. CGCAGGACATTGGCTACCCCGGTCGCATCACTCG 297589 33 100.0 35 ................................. GTTTTCGTAATCCCACATACGGATGGAAAAACCAT 297657 33 100.0 34 ................................. ATCAAAAGCTCGATGCCAACGCCCGTGATCTGGC 297724 33 100.0 34 ................................. TTCTGCGAGTTCATCAGGCGGCCGCTCCACACCG C [297734] 297792 33 100.0 34 ................................. GGGACCAGCCTGTGCCGCCGGTGCGAGGCGGCGC 297859 33 100.0 33 ................................. GTTATTCCAATATTTTCTACCAAGATGGAAAGG 297925 33 100.0 34 ................................. TCGCGCTCATCGCCCGCTTTGCCGTGGCGCACCT 297992 33 100.0 34 ................................. ACCAGCGCCTCATGCGGGACGTGTGGCCAGCGCT 298059 33 100.0 33 ................................. AAGGTTCCCGCCTCGTGGCGCATCGTCCGCGCA 298125 33 90.9 0 ..............................GCG | ========== ====== ====== ====== ================================= =================================== ================== 23 33 99.6 34 GTCACCCCCCGCGAGGGGGGTGCGGATTGAAAC # Left flank : GACTGCCTTATGTATCTTCTCGTAGCCTACGATGTTTCCACCTCGACACCCGCTGGTCAGCGTCGCTTGCGCAGAGTGGCGAAAGTCTGCCAGGATTACGGTCAACGCGTGCAGAATTCGGTTTTCGAATGTAAAGTCGAGCCAGCGCACTATGTTGCATTCAAGCAAAGTCTCCTTACTATCATAAATTCCCAAACAGACTCGTTGAGGTTCTATCACTTGGGAAGAAACTGGAAGCATCGTGTCGAGCAGTACGGTAAAAATACTGGCTACGACATCGAAGGGCTTCTTTTGGTCGAGTGATCTATAGCGCATAACGGTGCGCGAACCTGAAGTTCACTGTGTTTTCCCGTGAGGTTCGCGATTGTCGCAAGCGCTTGGCCACGCGTTCTTTGACAGTTGTGTCTATTGATTTTTCATCCTGAGCGAACTAAGTGAACGATAGGTTCGCGTTTTCTTGCCCATAACCCGCTCTATATCCATAACTTGGCTTATGTACG # Right flank : GCGCCGGACATCAGTCTGGACTATGGTCAGGATAACGCCGCCATTTGAAGCTATTGTTGAGGGCAACATCCATCAGAAGGACCCCTAAGTCAGAACTTGTATTGCAGGTCGGTGATGAACAAATTGTATTCTTGGCGGCCAAGATTGACGTTCCAGCTCGTCGTCGGGAGGTGAACGCCGGGATAGTCCGTGGAGCCAAACGTATAGCTGGTCGGATCGATGAAGAGGTACCGGTATTCGAGAAACAGGTAAGTGTTTTTGAATATTTCAGCTTTGATACCGGCTTTCAACTGCCACGCGAAGACGAAGTCGGAGGCGTCCGGGTCCGAATTGAAATGGTTGATGCCGGATTCGGACGGGTTCGCGGAGTCCGATCCGCTGATGGAGACAAAGGCCCCTCCGGCTCCCAGCTCGAAGTAAGGAAAAATCTTGTCGGAGTGCGGAGTCTGAAGGACAAGAACCGCGTTGGGCAGGACGATGCTGGTGGAGATGGGAACCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCCCCGCGAGGGGGGTGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //