Array 1 1482-128 **** Predicted by CRISPRDetect 2.4 *** >NZ_UPSF01000004.1 Treponema pectinovorum strain ATCC 700769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1481 36 88.9 30 A..TT.A............................. TTGTTAACATTCTGCCGAACCTTGTAAGAA 1415 36 100.0 30 .................................... AGGGCTTGGAACTTCTTCTATGGAAGTGTC 1349 36 100.0 30 .................................... TTTAAAGTATCTTTTGAAGCGATGTTTTTA 1283 36 100.0 30 .................................... AACCGCCAATATCAGAAGATGTTGCCACCC 1217 36 100.0 30 .................................... TGTTGTACGAATTTAAAAAGTATTTTACAT 1151 36 100.0 30 .................................... TATAAGGCTTAGGCTGGAAAATTAAGGTTT 1085 36 100.0 30 .................................... GTTTTTCCTGTTTTGCTATCTGTGTATTCT 1019 36 100.0 30 .................................... GTGTTTTTTTTTCTTAAAAAGGTGTTTCCT 953 36 100.0 30 .................................... ATGACAGCGTTTATCGAAAAATTGTATTTT 887 36 100.0 30 .................................... TTTTCTTATGTCAAACCCTGTGTATTCCAT 821 36 100.0 30 .................................... TTTGACGCAATTTGCGTAAACAGCGAACGA 755 36 100.0 30 .................................... TCAAGACTCTATTTCTCAAACAGAAAACAA 689 36 100.0 30 .................................... CTTCATCAATGACTGGCACATTCATAGTTA 623 36 100.0 30 .................................... CGCTCAATGGTTGAGTTGGATAGGTCGGGT 557 36 100.0 30 .................................... CCTAAAAGCTGATGAACGTCTCCACCTTCC 491 36 100.0 29 .................................... AGGTATTGTAAGTTATCTCAACTGTCTTT 426 36 100.0 30 .................................... TTTTTTCAGAAAAAAGGTATCTATCTTTCT 360 36 100.0 30 .................................... CCAAGCCTTTGCAGAGCCATATCCGCTGTT 294 36 100.0 29 .................................... AAATATGAAAATTAAAAATACTCAACATG 229 36 100.0 30 .................................... CGAGTAATTTTATACTGAGGCTTAACTCTC 163 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.5 30 GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Left flank : CCCTTGCACTGTCTCGTGTTATTCCTGTTTGCTTTGTAAAATCTCGTGCGGCAGCCTGCCATTCACCTATCTTCTGCCTTGCTCTTGTGTTGTCTACTCCTGTCGCTTCCTGCGTTAATGCTTGCCGTTTATATCGCCTTATGTTTCGTTCTATGTCTCTAAGTTTTTGCTCATCGTCATAGTATGATAGTTCCTCGCCGTTGTAGGTTACTGTCTTGCTTGCCATTTCGTCTAAGTCGTCTCCTGTGTGTAATGCTCTTTTGTTCCCTCAAAGTAGGGATAAAATGAATGTCGGCAGTTTATACCGCACAATCCTGTCACACTCCCCAGTCCGCAAACGCTGTACAATTCTTTCTTTGTGAAAATCTTCCCTTGCCATTCTTCGTGTTCTGCTTTTGAGCCGATATGGGCGGAAACTTCAAACTTTTCAACTCCTAATTCGTCCGCATTGTTCAATGTCTGGTTTGCTGCCGTTTGGTTTATCGATGTGAGGATAAAAT # Right flank : TTCCGTCTGATGTATTTTCTTTTTTTGCATAGAAATACAGTGCATCAGGCGGATTTTTTTTGTGTGCTTATCAGAATAAAAGGAGTTGTTCGTTCTGCTTTTTTTGTTGTTTTTCTCTTGAATGATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 1237936-1239024 **** Predicted by CRISPRDetect 2.4 *** >NZ_UPSF01000001.1 Treponema pectinovorum strain ATCC 700769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1237936 36 88.9 30 A..TT.A............................. ATAAGTTGCATTGTCATCTTGAACCATTCT 1238002 36 100.0 30 .................................... TTACCCGGCTCAAACTCGTGTTGCATAACT 1238068 36 100.0 30 .................................... ACAGATTATAAATAAAAATGTCAACTTTTT 1238134 36 100.0 29 .................................... ATTTTGTACAACTACCGTTCTATCGCCGT 1238199 36 100.0 30 .................................... GCGTTCCTACTGGATAAATGCCTTCTTCAA 1238265 36 100.0 29 .................................... GTAAGGCTTAGGCTGGAAAATTAAAGTCT 1238330 36 100.0 30 .................................... TGCTGCTGGGTTGGTTAATCTTTTTACTTT 1238396 36 100.0 30 .................................... TTTAAAGTATCTTTTGAAGCGATGTTTTTA 1238462 36 100.0 30 .................................... TGATGGGAGCAGGTTTACTACTCTTTGCTT 1238528 36 100.0 30 .................................... AACATCTTCGATCGCTTCTTTATCAAGACC 1238594 36 100.0 30 .................................... ATATATATAAGACATTAAAATAATTTAAGG 1238660 36 100.0 30 .................................... GAATTCTATACGCAACTGCAAATCGCCACG 1238726 36 100.0 30 .................................... TTTTTTCATAAAAAAGGTATCCATTTTTTT 1238792 36 100.0 29 .................................... GTATCAAAAAAGGTATATAAAATAGAAAA 1238857 36 100.0 30 .................................... ACAAATTTTTGGATAGTCTTTTCCATTTCC 1238923 36 100.0 30 .................................... AGTATCAAAAAAGGTATCTAAAATCGAAAA 1238989 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.3 30 GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Left flank : TTCCCTTGCACTGTCTCGTGTTATTCCTGTCTGCTTTGTAAAATCTCGTGCGGCTGCCTGCCATTCGCCTATTTTCTGCCTTGCTCTTGTGTTGTCTACTCCTGCCGCTTCCTGTGTTAATGCTTGCCGTTTATATCGCCTTATGTTTCGTTCTATGCCTCTTAGGTGTTGTTCTCCCTCGTAACGCGTCAGGCTCTCGCCGTTAAACTCTACTTTTTCGTTTGCTAAACTGTCTAAATCGTCTTGGCTGTAATGCTCTTTTGTTCCCTCAAAGTAGGGATAAAATGAATGGCGGCAGTTTATTCCACATATTCCTGTAGCACTTCCGAGTCCGCAAATGCTGTACAATCCTTTCTTTGTGAAAATCTTCCCTTGCCATTCTTCGTGTTCTGGTCTTGAGCCGATATGAACAGAAACTTCAAACTTTTCAACTCCTAATTCGTCTGCATTGTTCAATGTCTGGTTTGCTGCCGTTTGGTTTATCGATGTGAGGATAAAAT # Right flank : TCCGTCTGATGTATTTTCTTTTTTTGCATAGAAATACAGTGCATCAGGCGGATTTTTTTTGTGTGCTTATCAGAATAAAAGGAGTTGTTCGTTCTGCTTTTTTTGTTGTTTTTCTCTTGAATGATAACTGATAATATTTCCATATTGATGATCCGTTATCGTTAGAATATCCACTTTTCCCTGCGCAGGCAAGTTTTTTTGTATCATTTTATAGTATTTTTCACAGGCATCCTTTCCAGAAAATAGTTTTGTATAAATTGAATATTGAACCATGGAAAATCCGTTATCTAATAAAAAATTTCTAAAAGCAGTCGCTGCCTTTTGATCAGATTTTTCAACAACAGGTAAATCAAAAAAAACTAAAATCCACATAAGCTCATACCTACTCAATAATGGTAATTCCATTTAAATTGTTCTCCCATTCTGGCAGTTCAATAACAGGTTTCCCTTCTTCTAATGCATGAACATAAGAAGCCACTAGATATTGCATACTCTGGCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //